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Genome Wide Identification and Characterization of Apple BHLH Transcription Factors and Expression Analysis in Response to Drought and Salt Stress

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Journal Front Plant Sci
Date 2017 Apr 27
PMID 28443104
Citations 91
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Abstract

The bHLH (basic helix-loop-helix) transcription factor family is the second largest in plants. It occurs in all three eukaryotic kingdoms, and plays important roles in regulating growth and development. However, family members have not previously been studied in apple. Here, we identified 188 MdbHLH proteins in apple "Golden Delicious" ( × Borkh.), which could be classified into 18 groups. We also investigated the gene structures and 12 conserved motifs in these s. Coupled with expression analysis and protein interaction network prediction, we identified several genes that might be responsible for abiotic stress responses. This study provides insight and rich resources for subsequent investigations of such proteins in apple.

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References
1.
Carretero-Paulet L, Galstyan A, Roig-Villanova I, Martinez-Garcia J, Bilbao-Castro J, Robertson D . Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae. Plant Physiol. 2010; 153(3):1398-412. PMC: 2899937. DOI: 10.1104/pp.110.153593. View

2.
Feller A, Machemer K, Braun E, Grotewold E . Evolutionary and comparative analysis of MYB and bHLH plant transcription factors. Plant J. 2011; 66(1):94-116. DOI: 10.1111/j.1365-313X.2010.04459.x. View

3.
An R, Liu X, Wang R, Wu H, Liang S, Shao J . The over-expression of two transcription factors, ABS5/bHLH30 and ABS7/MYB101, leads to upwardly curly leaves. PLoS One. 2014; 9(9):e107637. PMC: 4182325. DOI: 10.1371/journal.pone.0107637. View

4.
Simionato E, Ledent V, Richards G, Thomas-Chollier M, Kerner P, Coornaert D . Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics. BMC Evol Biol. 2007; 7:33. PMC: 1828162. DOI: 10.1186/1471-2148-7-33. View

5.
Chinnusamy V, Ohta M, Kanrar S, Lee B, Hong X, Agarwal M . ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. Genes Dev. 2003; 17(8):1043-54. PMC: 196034. DOI: 10.1101/gad.1077503. View