» Articles » PMID: 28280730

Cancer-Related Triplets of MRNA-lncRNA-miRNA Revealed by Integrative Network in Uterine Corpus Endometrial Carcinoma

Overview
Journal Biomed Res Int
Publisher Wiley
Date 2017 Mar 11
PMID 28280730
Citations 20
Authors
Affiliations
Soon will be listed here.
Abstract

The regulation of transcriptome expression level is a complex process involving multiple-level interactions among molecules such as protein coding RNA (mRNA), long noncoding RNA (lncRNA), and microRNA (miRNA), which are essential for the transcriptome stability and maintenance and regulation of body homeostasis. The availability of multilevel expression data enables a comprehensive view of the regulatory network. In this study, we analyzed the coding and noncoding gene expression profiles of 301 patients with uterine corpus endometrial carcinoma (UCEC). A new method was proposed to construct a genome-wide integrative network based on variance inflation factor (VIF) regression method. The cross-regulation relations of mRNA, lncRNA, and miRNA were then selected based on clique-searching algorithm from the network, when any two molecules of the three were shown as interacting according to the integrative network. Such relation, which we call the mRNA-lncRNA-miRNA triplet, demonstrated the complexity in transcriptome regulation process. Finally, six UCEC-related triplets were selected in which the mRNA participates in endometrial carcinoma pathway, such as CDH1 and TP53. The multi-type RNAs are proved to be cross-regulated as to each of the six triplets according to literature. All the triplets demonstrated the association with the initiation and progression of UCEC. Our method provides a comprehensive strategy for the investigation of transcriptome regulation mechanism.

Citing Articles

Deciphering DNA repair gene mutational landscape in uterine corpus endometrial carcinoma patients using next generation sequencing.

Lou J, Chu X, Yang X, Jamil M, Zhu H Am J Cancer Res. 2024; 14(1):210-226.

PMID: 38323278 PMC: 10839304.


TPD52 as a Potential Prognostic Biomarker and its Correlation with Immune Infiltrates in Uterine Corpus Endometrial Carcinoma: Bioinformatic Analysis and Experimental Verification.

Miao L, Chen B, Jing L, Zeng T, Chen Y Recent Pat Anticancer Drug Discov. 2024; 20(1):71-88.

PMID: 38305309 DOI: 10.2174/0115748928267447231107101539.


CXC chemokines: Potential biomarker and immunotherapeutic target for uterine corpus endometrial carcinoma.

Wang G, Fu J, Liu M, Zheng Q PLoS One. 2024; 19(1):e0277872.

PMID: 38232115 PMC: 10793908. DOI: 10.1371/journal.pone.0277872.


The Role of miRNAs in the Development, Proliferation, and Progression of Endometrial Cancer.

Bogaczyk A, Zawlik I, Zuzak T, Kluz M, Potocka N, Kluz T Int J Mol Sci. 2023; 24(14).

PMID: 37511248 PMC: 10380838. DOI: 10.3390/ijms241411489.


Long non‑coding RNA BLACAT2/miR‑378a‑3p/YY1 feedback loop promotes the proliferation, migration and invasion of uterine corpus endometrial carcinoma.

Zhang C, Wang R, Li M, Yang Q Oncol Rep. 2023; 49(5).

PMID: 37052291 PMC: 10152453. DOI: 10.3892/or.2023.8544.


References
1.
Chmelarova M, Kos S, Dvorakova E, Spacek J, Laco J, Ruszova E . Importance of promoter methylation of GATA4 and TP53 genes in endometrioid carcinoma of endometrium. Clin Chem Lab Med. 2014; 52(8):1229-34. DOI: 10.1515/cclm-2013-0162. View

2.
Yoon J, Abdelmohsen K, Gorospe M . Functional interactions among microRNAs and long noncoding RNAs. Semin Cell Dev Biol. 2014; 34:9-14. PMC: 4163095. DOI: 10.1016/j.semcdb.2014.05.015. View

3.
Dong R, Qiu H, Du G, Wang Y, Yu J, Mao C . Restoration of microRNA‑218 increases cellular chemosensitivity to cervical cancer by inhibiting cell‑cycle progression. Mol Med Rep. 2014; 10(6):3289-95. DOI: 10.3892/mmr.2014.2622. View

4.
Sanchez Y, Segura V, Marin-Bejar O, Athie A, Marchese F, Gonzalez J . Genome-wide analysis of the human p53 transcriptional network unveils a lncRNA tumour suppressor signature. Nat Commun. 2014; 5:5812. PMC: 4284803. DOI: 10.1038/ncomms6812. View

5.
Ganci F, Sacconi A, Bossel Ben-Moshe N, Manciocco V, Sperduti I, Strigari L . Expression of TP53 mutation-associated microRNAs predicts clinical outcome in head and neck squamous cell carcinoma patients. Ann Oncol. 2013; 24(12):3082-8. PMC: 3841017. DOI: 10.1093/annonc/mdt380. View