» Articles » PMID: 27995788

Glycan OH Exchange Rate Determination in Aqueous Solution: Seeking Evidence for Transient Hydrogen Bonds

Overview
Journal J Phys Chem B
Specialty Chemistry
Date 2016 Dec 21
PMID 27995788
Citations 7
Authors
Affiliations
Soon will be listed here.
Abstract

Hydrogen bonds (Hbonds) are important stabilizing forces in biomolecules. However, for glycans in aqueous solution, direct NMR detection of Hbonds is elusive because of their transient nature. Here, we present Isotope-based Natural-abundance TOtal correlation eXchange SpectroscopY (INTOXSY), a new H-C heteronuclear single quantum coherence-total correlation spectroscopy based method, to extract OH groups' exchange rate constants (k) for molecules in natural C abundance and show that OH Hbonds can be inferred from "slower" H/D k. We evaluate k measured with INTOXSY in light of those extracted with line-shape analysis. Subsequently, we use a set of common glycans to establish a k reference basis set and to infer the existence of transient Hbonds involving OH donor groups. Then, we report k values for a series of mono- and disaccharides, as well as for oligosaccharides sialyl Lewis X and β-cyclodextrin, and compare the results with those from the reference set to extract Hbond information. Finally, we utilize NMR experimental data in conjunction with molecular dynamics simulations to establish donor and acceptor Hbond pairs. Our exchange rate measurements indicate that OH/OD exchange rates, k, values <10 s are consistent with transient Hbond OH groups and potential acceptor groups can be uncovered through MD simulations.

Citing Articles

Measuring Hydroxyl Exchange Rates in Glycans Using a Synergistic Combination of Saturation Transfer and Relaxation Dispersion NMR.

Varghese C, Jaladeep A, Sekhar A J Am Chem Soc. 2024; 146(6):3825-3835.

PMID: 38293947 PMC: 7615893. DOI: 10.1021/jacs.3c10982.


Glycan Shape, Motions, and Interactions Explored by NMR Spectroscopy.

Widmalm G JACS Au. 2024; 4(1):20-39.

PMID: 38274261 PMC: 10807006. DOI: 10.1021/jacsau.3c00639.


The Incorporation of Labile Protons into Multidimensional NMR Analyses: Glycan Structures Revisited.

Novakovic M, Battistel M, Azurmendi H, Concilio M, Freedberg D, Frydman L J Am Chem Soc. 2021; 143(23):8935-8948.

PMID: 34085814 PMC: 8297728. DOI: 10.1021/jacs.1c04512.


Conformational properties of l-fucose and the tetrasaccharide building block of the sulfated l-fucan from Lytechinus variegatus.

Bezerra F, Vignovich W, Aderibigbe A, Liu H, Sharp J, Doerksen R J Struct Biol. 2019; 209(1):107407.

PMID: 31698075 PMC: 7810140. DOI: 10.1016/j.jsb.2019.107407.


A Solution NMR Approach To Determine the Chemical Structures of Carbohydrates Using the Hydroxyl Groups as Starting Points.

Brown G, Bauer J, Osborn H, Kuemmerle R ACS Omega. 2019; 3(12):17957-17975.

PMID: 31458388 PMC: 6644132. DOI: 10.1021/acsomega.8b02136.