Functional Genomics, Genetics, and Bioinformatics 2016

Overview

Journal Biomed Res Int

Publisher Wiley

Specialties Biomedical Engineering
Biotechnology
General Medicine

Date 2016 Dec 21

PMID 27995138

Citations 1

Authors

Youping Deng

Hongwei Wang

Ryuji Hamamoto

Shiwei Duan

Mehdi Pirooznia

Yongsheng Bai

Affiliations

Soon will be listed here.

Citing Articles

Identification of lncRNA biomarkers for lung cancer through integrative cross-platform data analyses.

Zhao T, Khadka V, Deng Y Aging (Albany NY). 2020; 12(14):14506-14527.

PMID: 32675385 PMC: 7425463. DOI: 10.18632/aging.103496.

References

Kumar D, Bansal G, Narang A, Basak T, Abbas T, Dash D . Integrating transcriptome and proteome profiling: Strategies and applications. Proteomics. 2016; 16(19):2533-2544. DOI: 10.1002/pmic.201600140. View

Jia M, Liu Y, Shen Z, Zhao C, Zhang M, Yi Z . HDAM: a resource of human disease associated mutations from next generation sequencing studies. BMC Med Genomics. 2013; 6 Suppl 1:S16. PMC: 3552701. DOI: 10.1186/1755-8794-6-S1-S16. View

Wei X, Ai J, Deng Y, Guan X, Johnson D, Ang C . Identification of biomarkers that distinguish chemical contaminants based on gene expression profiles. BMC Genomics. 2014; 15:248. PMC: 4051169. DOI: 10.1186/1471-2164-15-248. View

Bonev B, Cavalli G . Organization and function of the 3D genome. Nat Rev Genet. 2016; 17(11):661-678. DOI: 10.1038/nrg.2016.112. View

Wang J, Li M, Deng Y, Pan Y . Recent advances in clustering methods for protein interaction networks. BMC Genomics. 2010; 11 Suppl 3:S10. PMC: 2999340. DOI: 10.1186/1471-2164-11-S3-S10. View

Uhlen M, Hallstrom B, Lindskog C, Mardinoglu A, Ponten F, Nielsen J . Transcriptomics resources of human tissues and organs. Mol Syst Biol. 2016; 12(4):862. PMC: 4848759. DOI: 10.15252/msb.20155865. View

Chen X, Chen X, Xu Y, Yang W, Wu N, Ye H . Association of six CpG-SNPs in the inflammation-related genes with coronary heart disease. Hum Genomics. 2016; 10 Suppl 2:21. PMC: 4965732. DOI: 10.1186/s40246-016-0067-1. View

Melson J, Li Y, Cassinotti E, Melnikov A, Boni L, Ai J . Commonality and differences of methylation signatures in the plasma of patients with pancreatic cancer and colorectal cancer. Int J Cancer. 2013; 134(11):2656-62. DOI: 10.1002/ijc.28593. View

Chen X, Chen H, Dai M, Ai J, Li Y, Mahon B . Plasma lipidomics profiling identified lipid biomarkers in distinguishing early-stage breast cancer from benign lesions. Oncotarget. 2016; 7(24):36622-36631. PMC: 5095026. DOI: 10.18632/oncotarget.9124. View

10.

Zhang F, Deng Y, Wang M, Cui L, Drabier R . Pathway-based Biomarkers for Breast Cancer in Proteomics. Cancer Inform. 2015; 13(Suppl 5):101-8. PMC: 4324474. DOI: 10.4137/CIN.S14069. View

11.

Sun Z, Cunningham J, Slager S, Kocher J . Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis. Epigenomics. 2015; 7(5):813-28. PMC: 4790440. DOI: 10.2217/epi.15.21. View

12.

Ling Hu , Ai J, Long H, Liu W, Wang X, Zuo Y . Integrative microRNA and gene profiling data analysis reveals novel biomarkers and mechanisms for lung cancer. Oncotarget. 2016; 7(8):8441-54. PMC: 4890978. DOI: 10.18632/oncotarget.7264. View

13.

Deng Y, Meyer S, Guan X, Escalon B, Ai J, Wilbanks M . Analysis of common and specific mechanisms of liver function affected by nitrotoluene compounds. PLoS One. 2011; 6(2):e14662. PMC: 3035612. DOI: 10.1371/journal.pone.0014662. View

14.

Cambiaghi A, Ferrario M, Masseroli M . Analysis of metabolomic data: tools, current strategies and future challenges for omics data integration. Brief Bioinform. 2016; 18(3):498-510. DOI: 10.1093/bib/bbw031. View

15.

Marcinkiewicz-Siemion M, Ciborowski M, Kretowski A, Musial W, Kaminski K . Metabolomics - A wide-open door to personalized treatment in chronic heart failure?. Int J Cardiol. 2016; 219:156-63. DOI: 10.1016/j.ijcard.2016.06.022. View

16.

Zierer J, Menni C, Kastenmuller G, Spector T . Integration of 'omics' data in aging research: from biomarkers to systems biology. Aging Cell. 2015; 14(6):933-44. PMC: 4693464. DOI: 10.1111/acel.12386. View