Genomic Comparison of Strains Isolated from Bean Nodules

Overview

Journal Front Microbiol

Specialty Microbiology

Date 2016 Nov 12

PMID 27833604

Citations 3

Authors

Alejandro Aguilar

Humberto Peralta

Yolanda Mora

Rafael Diaz

Carmen Vargas-Lagunas

Lourdes Girard

Jaime Mora

Affiliations

Soon will be listed here.

Citing Articles

Valorization of rice stubble through biodegradation using hydrolytic enzyme-producing CMB10 and SFMB9.

Gajbhiye M, Patil S, Awate S, Kokare S, Terdale S, Dubey M Heliyon. 2025; 11(2):e42094.

PMID: 39925349 PMC: 11804540. DOI: 10.1016/j.heliyon.2025.e42094.

The Mexican giant maize of Jala landrace harbour plant-growth-promoting rhizospheric and endophytic bacteria.

Rios-Galicia B, Villagomez-Garfias C, De la Vega-Camarillo E, Guerra-Camacho J, Medina-Jaritz N, Arteaga-Garibay R 3 Biotech. 2021; 11(10):447.

PMID: 34631348 PMC: 8463652. DOI: 10.1007/s13205-021-02983-6.

Distinct signaling routes mediate intercellular and intracellular rhizobial infection in Lotus japonicus.

Montiel J, Reid D, Gronbaek T, Benfeldt C, James E, Ott T Plant Physiol. 2021; 185(3):1131-1147.

PMID: 33793909 PMC: 8133683. DOI: 10.1093/plphys/kiaa049.

Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris).

Aguilar A, Mora Y, Davalos A, Girard L, Mora J, Peralta H BMC Genomics. 2018; 19(1):645.

PMID: 30165827 PMC: 6117902. DOI: 10.1186/s12864-018-5023-0.

References

Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J . SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience. 2013; 1(1):18. PMC: 3626529. DOI: 10.1186/2047-217X-1-18. View

Singh R, Prasad M . Advances in Agrobacterium tumefaciens-mediated genetic transformation of graminaceous crops. Protoplasma. 2015; 253(3):691-707. DOI: 10.1007/s00709-015-0905-3. View

Bourras S, Rouxel T, Meyer M . Agrobacterium tumefaciens Gene Transfer: How a Plant Pathogen Hacks the Nuclei of Plant and Nonplant Organisms. Phytopathology. 2015; 105(10):1288-301. DOI: 10.1094/PHYTO-12-14-0380-RVW. View

Lassalle F, Campillo T, Vial L, Baude J, Costechareyre D, Chapulliot D . Genomic species are ecological species as revealed by comparative genomics in Agrobacterium tumefaciens. Genome Biol Evol. 2011; 3:762-81. PMC: 3163468. DOI: 10.1093/gbe/evr070. View

Aujoulat F, Marchandin H, Zorgniotti I, Masnou A, Jumas-Bilak E . Rhizobium pusense is the main human pathogen in the genus Agrobacterium/Rhizobium. Clin Microbiol Infect. 2015; 21(5):472.e1-5. DOI: 10.1016/j.cmi.2014.12.005. View

Yoshida M, Yoshida-Takashima Y, Nunoura T, Takai K . Genomic characterization of a temperate phage of the psychrotolerant deep-sea bacterium Aurantimonas sp. Extremophiles. 2014; 19(1):49-58. DOI: 10.1007/s00792-014-0702-5. View

Crook M, Mitra S, Ane J, Sadowsky M, Gyaneshwar P . Complete Genome Sequence of the Sesbania Symbiont and Rice Growth-Promoting Endophyte Rhizobium sp. Strain IRBG74. Genome Announc. 2013; 1(6). PMC: 3837170. DOI: 10.1128/genomeA.00934-13. View

Arndt D, Grant J, Marcu A, Sajed T, Pon A, Liang Y . PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Res. 2016; 44(W1):W16-21. PMC: 4987931. DOI: 10.1093/nar/gkw387. View

Daxboeck F, Zitta S, Assadian O, Krause R, Wenisch C, Kovarik J . Ochrobactrum anthropi bloodstream infection complicating hemodialysis. Am J Kidney Dis. 2002; 40(4):E17. DOI: 10.1053/ajkd.2002.35759. View

10.

Tanaka K, Arafat H, Urbanczyk H, Yamamoto S, Moriguchi K, Sawada H . Ability of Agrobacterium tumefaciens and A. rhizogenes strains, inability of A. vitis and A. rubi strains to adapt to salt-insufficient environment, and taxonomic significance of a simple salt requirement test in the pathogenic Agrobacterium species. J Gen Appl Microbiol. 2009; 55(1):35-41. DOI: 10.2323/jgam.55.35. View

11.

Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B . Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. J Biotechnol. 2011; 155(1):50-62. DOI: 10.1016/j.jbiotec.2011.01.010. View

12.

Mousavi S, Willems A, Nesme X, De Lajudie P, Lindstrom K . Revised phylogeny of Rhizobiaceae: proposal of the delineation of Pararhizobium gen. nov., and 13 new species combinations. Syst Appl Microbiol. 2015; 38(2):84-90. DOI: 10.1016/j.syapm.2014.12.003. View

13.

Han X, Pham A, Tarrand J, Rolston K, Helsel L, Levett P . Bacteriologic characterization of 36 strains of Roseomonas species and proposal of Roseomonas mucosa sp nov and Roseomonas gilardii subsp rosea subsp nov. Am J Clin Pathol. 2003; 120(2):256-64. DOI: 10.1309/731V-VGVC-KK35-1Y4J. View

14.

Ramirez-Bahena M, Vial L, Lassalle F, Diel B, Chapulliot D, Daubin V . Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid. Mol Phylogenet Evol. 2014; 73:202-7. DOI: 10.1016/j.ympev.2014.01.005. View

15.

Goldstein R, Sedivy J, Ljungquist E . Propagation of satellite phage P4 as a plasmid. Proc Natl Acad Sci U S A. 1982; 79(2):515-9. PMC: 345774. DOI: 10.1073/pnas.79.2.515. View

16.

Aziz R, Bartels D, Best A, DeJongh M, Disz T, Edwards R . The RAST Server: rapid annotations using subsystems technology. BMC Genomics. 2008; 9:75. PMC: 2265698. DOI: 10.1186/1471-2164-9-75. View

17.

Mhamdi R, Mrabet M, Laguerre G, Tiwari R, Aouani M . Colonization of Phaseolus vulgaris nodules by Agrobacterium-like strains. Can J Microbiol. 2005; 51(2):105-11. DOI: 10.1139/w04-120. View

18.

Encarnacion S, Dunn M, Willms K, Mora J . Fermentative and aerobic metabolism in Rhizobium etli. J Bacteriol. 1995; 177(11):3058-66. PMC: 176993. DOI: 10.1128/jb.177.11.3058-3066.1995. View

19.

Mrabet M, Mnasri B, Romdhane S, Laguerre G, Aouani M, Mhamdi R . Agrobacterium strains isolated from root nodules of common bean specifically reduce nodulation by Rhizobium gallicum. FEMS Microbiol Ecol. 2006; 56(2):304-9. DOI: 10.1111/j.1574-6941.2006.00069.x. View

20.

Agarwal L, Purohit H . Genome Sequence of Rhizobium lupini HPC(L) Isolated from Saline Desert Soil, Kutch (Gujarat). Genome Announc. 2013; 1(1). PMC: 3569347. DOI: 10.1128/genomeA.00071-12. View