» Articles » PMID: 27687863

Simple and Rapid Direct Cloning and Heterologous Expression of Natural Product Biosynthetic Gene Cluster in Bacillus Subtilis Via Red/ET Recombineering

Overview
Journal Sci Rep
Specialty Science
Date 2016 Oct 1
PMID 27687863
Citations 13
Authors
Affiliations
Soon will be listed here.
Abstract

Heterologous expression of biosynthetic pathways is an important way to research and discover microbial natural products. Bacillus subtilis is a suitable host for the heterologous production of natural products from bacilli and related Firmicutes. Existing technologies for heterologous expression of large biosynthetic gene clusters in B. subtilis are complicated. Herein, we present a simple and rapid strategy for direct cloning based heterologous expression of biosynthetic pathways in B. subtilis via Red/ET recombineering, using a 5.2 kb specific direct cloning vector carrying homologous sequences to the amyE gene in B. subtilis and CcdB counterselection marker. Using a two-step procedure, two large biosynthetic pathways for edeine (48.3 kb) and bacillomycin (37.2 kb) from Brevibacillus brevis X23 and B. amyloliquefaciens FZB42, respectively, were directly cloned and subsequently integrated into the chromosome of B. subtilis within one week. The gene cluster for bacillomycin was successfully expressed in the heterologous host, although edeine production was not detectable. Compared with similar technologies, this method offers a simpler and more feasible system for the discovery of natural products from bacilli and related genera.

Citing Articles

When synthetic biology meets medicine.

Feng Y, Su C, Mao G, Sun B, Cai Y, Dai J Life Med. 2025; 3(1):lnae010.

PMID: 39872399 PMC: 11749639. DOI: 10.1093/lifemedi/lnae010.


A recombineering system for based on the native phage recombinase pair YqaJ/YqaK.

Liu Q, Li R, Shi H, Yang R, Shen Q, Cui Q Eng Microbiol. 2024; 3(3):100099.

PMID: 39628932 PMC: 11610992. DOI: 10.1016/j.engmic.2023.100099.


Advancements in gene editing technologies for probiotic-enabled disease therapy.

Wang L, Hu J, Li K, Zhao Y, Zhu M iScience. 2024; 27(9):110791.

PMID: 39286511 PMC: 11403445. DOI: 10.1016/j.isci.2024.110791.


Versatile allelic replacement and self-excising integrative vectors for plasmid genome mutation and complementation.

Gudeta D, Foley S Microbiol Spectr. 2023; 12(1):e0338723.

PMID: 37991378 PMC: 10782977. DOI: 10.1128/spectrum.03387-23.


Bacteria as genetically programmable producers of bioactive natural products.

Hug J, Krug D, Muller R Nat Rev Chem. 2023; 4(4):172-193.

PMID: 37128046 DOI: 10.1038/s41570-020-0176-1.


References
1.
Du D, Wang L, Tian Y, Liu H, Tan H, Niu G . Genome engineering and direct cloning of antibiotic gene clusters via phage ϕBT1 integrase-mediated site-specific recombination in Streptomyces. Sci Rep. 2015; 5:8740. PMC: 4349145. DOI: 10.1038/srep08740. View

2.
Ongley S, Bian X, Neilan B, Muller R . Recent advances in the heterologous expression of microbial natural product biosynthetic pathways. Nat Prod Rep. 2013; 30(8):1121-38. DOI: 10.1039/c3np70034h. View

3.
Choi S, Park S, Kim R, Kim S, Lee C, Kim J . Identification of a polymyxin synthetase gene cluster of Paenibacillus polymyxa and heterologous expression of the gene in Bacillus subtilis. J Bacteriol. 2009; 191(10):3350-8. PMC: 2687177. DOI: 10.1128/JB.01728-08. View

4.
Bachmann B, Van Lanen S, Baltz R . Microbial genome mining for accelerated natural products discovery: is a renaissance in the making?. J Ind Microbiol Biotechnol. 2013; 41(2):175-84. PMC: 4070288. DOI: 10.1007/s10295-013-1389-9. View

5.
Itaya M, Tsuge K, Koizumi M, Fujita K . Combining two genomes in one cell: stable cloning of the Synechocystis PCC6803 genome in the Bacillus subtilis 168 genome. Proc Natl Acad Sci U S A. 2005; 102(44):15971-6. PMC: 1276048. DOI: 10.1073/pnas.0503868102. View