Cyanobacterial Ultrastructure in Light of Genomic Sequence Data
Overview
Affiliations
Cyanobacteria are physiologically and morphologically diverse photosynthetic microbes that play major roles in the carbon and nitrogen cycles of the biosphere. Recently, they have gained attention as potential platforms for the production of biofuels and other renewable chemicals. Many cyanobacteria were characterized morphologically prior to the advent of genome sequencing. Here, we catalog cyanobacterial ultrastructure within the context of genomic sequence information, including high-magnification transmission electron micrographs that represent the diversity in cyanobacterial morphology. We place the image data in the context of tabulated protein domains-which are the structural, functional, and evolutionary units of proteins-from the 126 cyanobacterial genomes comprising the CyanoGEBA dataset. In particular, we identify the correspondence between ultrastructure and the occurrence of genes encoding protein domains related to the formation of cyanobacterial inclusions. This compilation of images and genome-level domain occurrence will prove useful for a variety of analyses of cyanobacterial sequence data and provides a guidebook to morphological features.
a proterozoic cyanobacterial microfossil and implications for cyanobacteria evolution.
Demoulin C, Sforna M, Lara Y, Cornet Y, Somogyi A, Medjoubi K iScience. 2024; 27(2):108865.
PMID: 38313056 PMC: 10837632. DOI: 10.1016/j.isci.2024.108865.
Oldest thylakoids in fossil cells directly evidence oxygenic photosynthesis.
Demoulin C, Lara Y, Lambion A, Javaux E Nature. 2024; 625(7995):529-534.
PMID: 38172638 DOI: 10.1038/s41586-023-06896-7.
Cyanotoxins and Other Bioactive Compounds from the Pasteur Cultures of Cyanobacteria (PCC).
Gugger M, Boullie A, Laurent T Toxins (Basel). 2023; 15(6).
PMID: 37368689 PMC: 10304443. DOI: 10.3390/toxins15060388.
Jung P, Azua-Bustos A, Gonzalez-Silva C, Mikhailyuk T, Zabicki D, Holzinger A Front Microbiol. 2021; 12:671742.
PMID: 34305839 PMC: 8295473. DOI: 10.3389/fmicb.2021.671742.
Genetic, Genomics, and Responses to Stresses in Cyanobacteria: Biotechnological Implications.
Cassier-Chauvat C, Blanc-Garin V, Chauvat F Genes (Basel). 2021; 12(4).
PMID: 33805386 PMC: 8066212. DOI: 10.3390/genes12040500.