Genome Sequence of the Organohalide-respiring Dehalogenimonas Alkenigignens Type Strain (IP3-3(T))

Overview

Journal Stand Genomic Sci

Publisher Biomed Central

Specialty Genetics

Date 2016 Jun 25

PMID 27340512

Citations 3

Authors

Trent A Key

Dray P Richmond

Kimberly S Bowman

Yong-Joon Cho

Jongsik Chun

Milton S da Costa

Fred A Rainey

William M Moe

Affiliations

Soon will be listed here.

Abstract

Dehalogenimonas alkenigignens IP3-3(T) is a strictly anaerobic, mesophilic, Gram negative staining bacterium that grows by organohalide respiration, coupling the oxidation of H2 to the reductive dehalogenation of polychlorinated alkanes. Growth has not been observed with any non-polyhalogenated alkane electron acceptors. Here we describe the features of strain IP3-3(T) together with genome sequence information and its annotation. The 1,849,792 bp high-quality-draft genome contains 1936 predicted protein coding genes, 47 tRNA genes, a single large subunit rRNA (23S-5S) locus, and a single, orphan, small unit rRNA (16S) locus. The genome contains 29 predicted reductive dehalogenase genes, a large majority of which lack cognate genes encoding membrane anchoring proteins.

Citing Articles

Dehalogenation of Chlorinated Ethenes to Ethene by a Novel Isolate, " Dehalogenimonas etheniformans".

Chen G, Kara Murdoch F, Xie Y, Murdoch R, Cui Y, Yang Y Appl Environ Microbiol. 2022; 88(12):e0044322.

PMID: 35674428 PMC: 9238427. DOI: 10.1128/aem.00443-22.

Genome Sequence, Proteome Profile, and Identification of a Multiprotein Reductive Dehalogenase Complex in Strain BRE15M.

Trueba-Santiso A, Wasmund K, Soder-Walz J, Marco-Urrea E, Adrian L J Proteome Res. 2020; 20(1):613-623.

PMID: 32975419 PMC: 7786376. DOI: 10.1021/acs.jproteome.0c00569.

Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes.

Yang Y, Higgins S, Yan J, Simsir B, Chourey K, Iyer R ISME J. 2017; 11(12):2767-2780.

PMID: 28809851 PMC: 5702733. DOI: 10.1038/ismej.2017.127.

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