» Articles » PMID: 27303902

Plant-specific DUF1110 Protein from Oryza Sativa: Expression, Purification and Crystallization

Overview
Specialty Chemistry
Date 2016 Jun 16
PMID 27303902
Citations 6
Authors
Affiliations
Soon will be listed here.
Abstract

The Os01T0156300 protein from Oryza sativa has been classified into the domain of unknown function (DUF) family DUF1110. DUF1110 family members exist in monocotyledons but not in dicotyledons, and share no sequence identity with proteins for which structures have been reported. In this study, the Os01T0156300 protein was crystallized using the hanging-drop vapour-diffusion method. X-ray diffraction data were collected to 1.84 Å resolution. The crystal belonged to space group P21, with unit-cell parameters a = 89.9, b = 89.8, c = 107.1 Å, β = 106.6°. The asymmetric unit was estimated to contain 6-11 molecules.

Citing Articles

Domain of unknown function (DUF) proteins in plants: function and perspective.

Luo C, Akhtar M, Min W, Bai X, Ma T, Liu C Protoplasma. 2023; 261(3):397-410.

PMID: 38158398 DOI: 10.1007/s00709-023-01917-8.


Genome-wide identification of gene family in and expression profiling under abiotic stresses.

Dong W, Tu J, Deng W, Zhang J, Xu Y, Gu A PeerJ. 2023; 11:e16168.

PMID: 37790624 PMC: 10544316. DOI: 10.7717/peerj.16168.


Intra-Varietal Diversity and Its Contribution to Wheat Evolution, Domestication, and Improvement in Wheat.

Li T, Kong C, Deng P, Li C, Zhao G, Li H Int J Mol Sci. 2023; 24(12).

PMID: 37373363 PMC: 10299346. DOI: 10.3390/ijms241210217.


Unraveling the Diverse Roles of Neglected Genes Containing Domains of Unknown Function (DUFs): Progress and Perspective.

Lv P, Wan J, Zhang C, Hina A, Al Amin G, Begum N Int J Mol Sci. 2023; 24(4).

PMID: 36835600 PMC: 9966272. DOI: 10.3390/ijms24044187.


Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity.

Ichimaru K, Yamaguchi K, Harada K, Nishio Y, Hori M, Ishikawa K Nat Commun. 2022; 13(1):2397.

PMID: 35577789 PMC: 9110426. DOI: 10.1038/s41467-022-30131-y.


References
1.
Doublie S . Preparation of selenomethionyl proteins for phase determination. Methods Enzymol. 1997; 276:523-30. View

2.
Otwinowski Z, Minor W . Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 1997; 276:307-26. DOI: 10.1016/S0076-6879(97)76066-X. View

3.
Delaglio F, Grzesiek S, Vuister G, Zhu G, Pfeifer J, Bax A . NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR. 1995; 6(3):277-93. DOI: 10.1007/BF00197809. View

4.
Finn R, Bateman A, Clements J, Coggill P, Eberhardt R, Eddy S . Pfam: the protein families database. Nucleic Acids Res. 2013; 42(Database issue):D222-30. PMC: 3965110. DOI: 10.1093/nar/gkt1223. View

5.
Ishikawa K, Yamaguchi K, Sakamoto K, Yoshimura S, Inoue K, Tsuge S . Bacterial effector modulation of host E3 ligase activity suppresses PAMP-triggered immunity in rice. Nat Commun. 2014; 5:5430. DOI: 10.1038/ncomms6430. View