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Parental Epigenetic Asymmetry of PRC2-mediated Histone Modifications in the Arabidopsis Endosperm

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Journal EMBO J
Date 2016 Apr 27
PMID 27113256
Citations 73
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Abstract

Parental genomes in the endosperm are marked by differential DNA methylation and are therefore epigenetically distinct. This epigenetic asymmetry is established in the gametes and maintained after fertilization by unknown mechanisms. In this manuscript, we have addressed the key question whether parentally inherited differential DNA methylation affects de novo targeting of chromatin modifiers in the early endosperm. Our data reveal that polycomb-mediated H3 lysine 27 trimethylation (H3K27me3) is preferentially localized to regions that are targeted by the DNA glycosylase DEMETER (DME), mechanistically linking DNA hypomethylation to imprinted gene expression. Our data furthermore suggest an absence of de novo DNA methylation in the early endosperm, providing an explanation how DME-mediated hypomethylation of the maternal genome is maintained after fertilization. Lastly, we show that paternal-specific H3K27me3-marked regions are located at pericentromeric regions, suggesting that H3K27me3 and DNA methylation are not necessarily exclusive marks at pericentromeric regions in the endosperm.

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References
1.
Pignatta D, Erdmann R, Scheer E, Picard C, Bell G, Gehring M . Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting. Elife. 2014; 3:e03198. PMC: 4115658. DOI: 10.7554/eLife.03198. View

2.
Bernatavichute Y, Zhang X, Cokus S, Pellegrini M, Jacobsen S . Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS One. 2008; 3(9):e3156. PMC: 2522283. DOI: 10.1371/journal.pone.0003156. View

3.
Hollister J, Gaut B . Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression. Genome Res. 2009; 19(8):1419-28. PMC: 2720190. DOI: 10.1101/gr.091678.109. View

4.
Deleris A, Stroud H, Bernatavichute Y, Johnson E, Klein G, Schubert D . Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana. PLoS Genet. 2012; 8(11):e1003062. PMC: 3510029. DOI: 10.1371/journal.pgen.1003062. View

5.
Du M, Luo M, Zhang R, Finnegan E, Koltunow A . Imprinting in rice: the role of DNA and histone methylation in modulating parent-of-origin specific expression and determining transcript start sites. Plant J. 2014; 79(2):232-42. DOI: 10.1111/tpj.12553. View