Phylogenetic Relationships of Rhizoctonia Fungi Within the Cantharellales

Overview

Journal Fungal Biol

Specialty Microbiology

Date 2016 Mar 30

PMID 27020160

Citations 17

Authors

Dolores Gonzalez

Marianela Rodriguez-Carres

Teun Boekhout

Joost Stalpers

Eiko E Kuramae

Andreia K Nakatani

Rytas Vilgalys

Marc A Cubeta

Affiliations

Soon will be listed here.

Abstract

Phylogenetic relationships of Rhizoctonia fungi within the order Cantharellales were studied using sequence data from portions of the ribosomal DNA cluster regions ITS-LSU, rpb2, tef1, and atp6 for 50 taxa, and public sequence data from the rpb2 locus for 165 taxa. Data sets were analysed individually and combined using Maximum Parsimony, Maximum Likelihood, and Bayesian Phylogenetic Inference methods. All analyses supported the monophyly of the family Ceratobasidiaceae, which comprises the genera Ceratobasidium and Thanatephorus. Multi-locus analysis revealed 10 well-supported monophyletic groups that were consistent with previous separation into anastomosis groups based on hyphal fusion criteria. This analysis coupled with analyses of a larger sample of 165 rpb2 sequences of fungi in the Cantharellales supported a sister relationship between the Botryobasidiaceae and Ceratobasidiaceae and a sister relationship of the Tulasnellaceae with the rest of the Cantharellales. The inclusion of additional sequence data did not clarify incongruences observed in previous studies of Rhizoctonia fungi in the Cantharellales based on analyses of a single or multiple genes. The diversity of ecological and morphological characters associated with these fungi requires further investigation on character evolution for re-evaluating homologous and homoplasious characters.

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References

Hyakumachi M, Priyatmojo A, Kubota M, Fukui H . New Anastomosis Groups, AG-T and AG-U, of Binucleate Rhizoctonia spp. Causing Root and Stem Rot of Cut-Flower and Miniature Roses. Phytopathology. 2008; 95(7):784-92. DOI: 10.1094/PHYTO-95-0784. View

Mazzola M . Identification and Pathogenicity of Rhizoctonia spp. Isolated from Apple Roots and Orchard Soils. Phytopathology. 1997; 87(6):582-7. DOI: 10.1094/PHYTO.1997.87.6.582. View

Johanson A, Turner H, McKay G, Brown A . A PCR-based method to distinguish fungi of the rice sheath-blight complex, Rhizoctonia solani, R. oryzae and R. oryzae-sativae. FEMS Microbiol Lett. 1998; 162(2):289-94. DOI: 10.1111/j.1574-6968.1998.tb13011.x. View

Kottke I, Beiter A, Weiss M, Haug I, Oberwinkler F, Nebel M . Heterobasidiomycetes form symbiotic associations with hepatics: Jungermanniales have sebacinoid mycobionts while Aneura pinguis (Metzgeriales) is associated with a Tulasnella species. Mycol Res. 2003; 107(Pt 8):957-68. DOI: 10.1017/s0953756203008141. View

Huelsenbeck J, Ronquist F . MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 2001; 17(8):754-5. DOI: 10.1093/bioinformatics/17.8.754. View

Reeb V, Lutzoni F, Roux C . Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory. Mol Phylogenet Evol. 2004; 32(3):1036-60. DOI: 10.1016/j.ympev.2004.04.012. View

Matheny P, Wang Z, Binder M, Curtis J, Lim Y, Nilsson R . Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi). Mol Phylogenet Evol. 2006; 43(2):430-51. DOI: 10.1016/j.ympev.2006.08.024. View

Fontenot B, Makowsky R, Chippindale P . Nuclear-mitochondrial discordance and gene flow in a recent radiation of toads. Mol Phylogenet Evol. 2011; 59(1):66-80. DOI: 10.1016/j.ympev.2010.12.018. View

Stamatakis A . RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 2006; 22(21):2688-90. DOI: 10.1093/bioinformatics/btl446. View

10.

Rolfs F . CORTICIUM VAGUM B. AND C. VAR. SOLANI BURT. A FRUITING STAGE OF RHIZOCTONIA SOLANI. Science. 1903; 18(466):729. DOI: 10.1126/science.18.466.729-a. View

11.

Polizzi G, Aiello D, Guarnaccia V, Panebianco A, Formica P . First Report of Crown and Root Rot Caused by Rhizoctonia solani AG-4 on Banana Passionflower (Passiflora mollissima) in Italy. Plant Dis. 2019; 95(9):1194. DOI: 10.1094/PDIS-05-11-0411. View

12.

Kobert K, Salichos L, Rokas A, Stamatakis A . Computing the Internode Certainty and Related Measures from Partial Gene Trees. Mol Biol Evol. 2016; 33(6):1606-17. PMC: 4868120. DOI: 10.1093/molbev/msw040. View

13.

Carling D, Pope E, Brainard K, Carter D . Characterization of Mycorrhizal Isolates of Rhizoctonia solani from an Orchid, Including AG-12, a New Anastomosis Group. Phytopathology. 2008; 89(10):942-6. DOI: 10.1094/PHYTO.1999.89.10.942. View

14.

Liu Y, Whelen S, Hall B . Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Mol Biol Evol. 1999; 16(12):1799-808. DOI: 10.1093/oxfordjournals.molbev.a026092. View

15.

Kuninaga S, Natsuaki T, Takeuchi T, Yokosawa R . Sequence variation of the rDNA ITS regions within and between anastomosis groups in Rhizoctonia solani. Curr Genet. 1997; 32(3):237-43. DOI: 10.1007/s002940050272. View

16.

Bidartondo M, Bruns T, Weiss M, Sergio C, Read D . Specialized cheating of the ectomycorrhizal symbiosis by an epiparasitic liverwort. Proc Biol Sci. 2003; 270(1517):835-42. PMC: 1691308. DOI: 10.1098/rspb.2002.2299. View

17.

Hibbett D, Binder M, Bischoff J, Blackwell M, Cannon P, Eriksson O . A higher-level phylogenetic classification of the Fungi. Mycol Res. 2007; 111(Pt 5):509-47. DOI: 10.1016/j.mycres.2007.03.004. View

18.

Nosenko T, Schreiber F, Adamska M, Adamski M, Eitel M, Hammel J . Deep metazoan phylogeny: when different genes tell different stories. Mol Phylogenet Evol. 2013; 67(1):223-33. DOI: 10.1016/j.ympev.2013.01.010. View

19.

Schoch C, Sung G, Lopez-Giraldez F, Townsend J, Miadlikowska J, Hofstetter V . The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Syst Biol. 2010; 58(2):224-39. DOI: 10.1093/sysbio/syp020. View

20.

Liao X, Fu Y, Zhang S, Duan Y . First Report of Damping-Off on Basella rubra Caused by Rhizoctonia solani Anastomosis Group 4 in Florida. Plant Dis. 2019; 96(2):288. DOI: 10.1094/PDIS-08-11-0639. View