» Articles » PMID: 26864455

Current Experimental Methods for Characterizing Protein-Protein Interactions

Overview
Journal ChemMedChem
Specialties Chemistry
Pharmacology
Date 2016 Feb 12
PMID 26864455
Citations 43
Authors
Affiliations
Soon will be listed here.
Abstract

Protein molecules often interact with other partner protein molecules in order to execute their vital functions in living organisms. Characterization of protein-protein interactions thus plays a central role in understanding the molecular mechanism of relevant protein molecules, elucidating the cellular processes and pathways relevant to health or disease for drug discovery, and charting large-scale interaction networks in systems biology research. A whole spectrum of methods, based on biophysical, biochemical, or genetic principles, have been developed to detect the time, space, and functional relevance of protein-protein interactions at various degrees of affinity and specificity. This article presents an overview of these experimental methods, outlining the principles, strengths and limitations, and recent developments of each type of method.

Citing Articles

Structure-Based Approaches for Protein-Protein Interaction Prediction Using Machine Learning and Deep Learning.

Kiouri D, Batsis G, Chasapis C Biomolecules. 2025; 15(1).

PMID: 39858535 PMC: 11763140. DOI: 10.3390/biom15010141.


Pil1 Co-tethering Assay to Detect Protein-Protein Interactions in the Fission Yeast Schizosaccharomyces pombe.

Pan Z, Yang Y, Du L Methods Mol Biol. 2024; 2862:93-102.

PMID: 39527195 DOI: 10.1007/978-1-0716-4168-2_7.


MERS-CoV-nsp5 expression in human epithelial BEAS 2b cells attenuates type I interferon production by inhibiting IRF3 nuclear translocation.

Zhang Y, Kandwal S, Fayne D, Stevenson N Cell Mol Life Sci. 2024; 81(1):433.

PMID: 39395053 PMC: 11470912. DOI: 10.1007/s00018-024-05458-y.


Genetically Encoded Microtubule Binders for Single-Cell Interrogation of Cytoskeleton Dynamics and Protein Activity.

Zhou J, Liu X, Zhang D, Ma G ACS Sens. 2024; 9(9):4758-4766.

PMID: 39147600 PMC: 11443526. DOI: 10.1021/acssensors.4c01167.


Analyzing VEGFA/VEGFR1 Interaction: Application of the Resonant Recognition Model-Stockwell Transform Method to Explore Potential Therapeutics for Angiogenesis-Related Diseases.

Mukherjee T, Pattnaik A, Sahu S Protein J. 2024; 43(4):697-710.

PMID: 39014261 DOI: 10.1007/s10930-024-10219-8.


References
1.
Nguyen H, Park J, Kang S, Kim M . Surface plasmon resonance: a versatile technique for biosensor applications. Sensors (Basel). 2015; 15(5):10481-510. PMC: 4481982. DOI: 10.3390/s150510481. View

2.
Lin C, Tu P, Hsiao N, Chang C, Wan L, Lin Y . Identification of a novel septin 4 protein binding to human herpesvirus 8 kaposin A protein using a phage display cDNA library. J Virol Methods. 2007; 143(1):65-72. DOI: 10.1016/j.jviromet.2007.02.010. View

3.
Ladbury J, Chowdhry B . Sensing the heat: the application of isothermal titration calorimetry to thermodynamic studies of biomolecular interactions. Chem Biol. 1996; 3(10):791-801. DOI: 10.1016/s1074-5521(96)90063-0. View

4.
Rossi F, Charlton C, Blau H . Monitoring protein-protein interactions in intact eukaryotic cells by beta-galactosidase complementation. Proc Natl Acad Sci U S A. 1997; 94(16):8405-10. PMC: 22934. DOI: 10.1073/pnas.94.16.8405. View

5.
Peerlinck K, De Lepeleire I, Goldberg M, Farrell D, Barrett J, Hand E . MK-383 (L-700,462), a selective nonpeptide platelet glycoprotein IIb/IIIa antagonist, is active in man. Circulation. 1993; 88(4 Pt 1):1512-7. DOI: 10.1161/01.cir.88.4.1512. View