Evolutionary Character of Alternative Splicing in Plants

Overview

Journal Bioinform Biol Insights

Publisher Sage Publications

Specialty Biology

Date 2016 Jan 29

PMID 26819552

Citations 25

Authors

Chengjun Zhang

Hong Yang

Huizhao Yang

Affiliations

Soon will be listed here.

Abstract

Alternative splicing (AS) is one of the most important ways to enhance the functional diversity of genes. Huge amounts of data have been produced by microarray, expressed sequence tag, and RNA-seq, and plenty of methods have been developed specifically for this task. The most frequently asked questions in previous research were as follows. What is the content rate of AS genes among the whole gene set? How many AS types are presented in the genome, and which type is dominant? How about the conservation ability of AS among different species? Which kinds of isoforms from some genes have the environmental response to help individual adaptation? Based on this background, we collected analysis results from 17 species to try to map out the landscape of AS studies in plants. We have noted the shortages of previous results, and we appeal to all scientists working in the AS field to make a standard protocol so that analyses between different projects are comparable.

Citing Articles

Responsive Alternative Splicing Events of Species against Salt Stress.

Han M, Niu M, Gao T, Shen Y, Zhou X, Zhang Y Int J Mol Sci. 2024; 25(2).

PMID: 38279226 PMC: 10816081. DOI: 10.3390/ijms25021227.

MkcDBGAS: a reference-free approach to identify comprehensive alternative splicing events in a transcriptome.

Zhang Q, Cao L, Song H, Lin K, Pang E Brief Bioinform. 2023; 24(6).

PMID: 37833843 PMC: 10576019. DOI: 10.1093/bib/bbad367.

Mechanistic Insights into Alternative Gene Splicing in Oxidative Stress and Tissue Injury.

Dery K, Wong Z, Wei M, Kupiec-Weglinski J Antioxid Redox Signal. 2023; 41(13-15):890-909.

PMID: 37776178 PMC: 11631805. DOI: 10.1089/ars.2023.0437.

Alternative splicing as a source of phenotypic diversity.

Wright C, Smith C, Jiggins C Nat Rev Genet. 2022; 23(11):697-710.

PMID: 35821097 DOI: 10.1038/s41576-022-00514-4.

Temporal regulation of alternative splicing events in rice memory under drought stress.

Yang H, Li P, Jin G, Gui D, Liu L, Zhang C Plant Divers. 2022; 44(1):116-125.

PMID: 35281128 PMC: 8897166. DOI: 10.1016/j.pld.2020.11.004.

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