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[Strategies for Biobank Networks. Classification of Different Approaches for Locating Samples and an Outlook on the Future Within the BBMRI-ERIC]

Overview
Publisher Springer
Specialty Public Health
Date 2016 Jan 13
PMID 26753865
Citations 4
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Abstract

Background: Medical research projects often require more biological material than can be supplied by a single biobank. For this reason, a multitude of strategies support locating potential research partners with matching material without requiring centralization of sample storage.

Objectives: Classification of different strategies for biobank networks, in particular for locating suitable samples. Description of an IT infrastructure combining these strategies.

Materials And Methods: Existing strategies can be classified according to three criteria: (a) granularity of sample data: coarse bank-level data (catalogue) vs. fine-granular sample-level data, (b) location of sample data: central (central search service) vs. decentral storage (federated search services), and (c) level of automation: automatic (query-based, federated search service) vs. semi-automatic (inquiry-based, decentral search). All mentioned search services require data integration. Metadata help to overcome semantic heterogeneity.

Results: The "Common Service IT" in BBMRI-ERIC (Biobanking and BioMolecular Resources Research Infrastructure) unites a catalogue, the decentral search and metadata in an integrated platform. As a result, researchers receive versatile tools to search suitable biomaterial, while biobanks retain a high degree of data sovereignty.

Conclusions: Despite their differences, the presented strategies for biobank networks do not rule each other out but can complement and even benefit from each other.

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Linking a Consortium-Wide Data Quality Assessment Tool with the MIRACUM Metadata Repository.

Kapsner L, Mang J, Mate S, Seuchter S, Vengadeswaran A, Bathelt F Appl Clin Inform. 2021; 12(4):826-835.

PMID: 34433217 PMC: 8387126. DOI: 10.1055/s-0041-1733847.


Pan-European Data Harmonization for Biobanks in ADOPT BBMRI-ERIC.

Mate S, Kampf M, Rodle W, Kraus S, Proynova R, Silander K Appl Clin Inform. 2019; 10(4):679-692.

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[Requirements for a cross-location biobank IT infrastructure : Survey of stakeholder input on the establishment of a biobank network of the German Biobank Alliance (GBA)].

Schuttler C, Buschhuter N, Dollinger C, Ebert L, Hummel M, Linde J Pathologe. 2018; 39(4):289-296.

PMID: 29691676 DOI: 10.1007/s00292-018-0435-9.