Hale O, Yin M, Behringer M
bioRxiv. 2025; .
PMID: 40060621
PMC: 11888475.
DOI: 10.1101/2025.02.28.639667.
Herrera-Espejo S, Rubio A, Ceballos-Romero L, Pachon J, Cordero E, Perez-Pulido A
Biomolecules. 2025; 15(2).
PMID: 40001563
PMC: 11853403.
DOI: 10.3390/biom15020260.
Zewail-Foote M, Del Mundo I, Klattenhoff A, Vasquez K
Nucleic Acids Res. 2025; 53(4).
PMID: 39950343
PMC: 11826088.
DOI: 10.1093/nar/gkaf066.
Palsson G, Hardarson M, Jonsson H, Steinthorsdottir V, Stefansson O, Eggertsson H
Nature. 2025; .
PMID: 39843742
DOI: 10.1038/s41586-024-08450-5.
Stolc V, Karhanek M, Freund F, Griko Y, Loftus D, Ohayon M
Redox Biol. 2024; 78:103398.
PMID: 39586121
PMC: 11625351.
DOI: 10.1016/j.redox.2024.103398.
Extrachromosomal circular DNA orchestrates genome heterogeneity in urothelial bladder carcinoma.
Lv W, Pan X, Han P, Wu S, Zeng Y, Wang Q
Theranostics. 2024; 14(13):5102-5122.
PMID: 39267784
PMC: 11388072.
DOI: 10.7150/thno.99563.
Hypomorphic mutation in the large subunit of replication protein A affects mutagenesis by human APOBEC cytidine deaminases in yeast.
Dennen M, Kockler Z, Roberts S, Burkholder A, Klimczak L, Gordenin D
G3 (Bethesda). 2024; 14(10).
PMID: 39150943
PMC: 11457066.
DOI: 10.1093/g3journal/jkae196.
Hypomorphic mutation in the large subunit of replication protein A affects mutagenesis by human APOBEC cytidine deaminases in yeast.
Dennen M, Kockler Z, Roberts S, Burkholder A, Klimczak L, Gordenin D
bioRxiv. 2024; .
PMID: 38979205
PMC: 11230362.
DOI: 10.1101/2024.06.27.601081.
Exploring the Role of Clustered Mutations in Carcinogenesis and Their Potential Clinical Implications in Cancer.
Li Y, Zhu R, Jin J, Guo H, Zhang J, He Z
Int J Mol Sci. 2024; 25(12).
PMID: 38928450
PMC: 11203652.
DOI: 10.3390/ijms25126744.
DNA Damage, Genome Stability, and Adaptation: A Question of Chance or Necessity?.
Herrick J
Genes (Basel). 2024; 15(4).
PMID: 38674454
PMC: 11049855.
DOI: 10.3390/genes15040520.
APOBEC2 safeguards skeletal muscle cell fate through binding chromatin and regulating transcription of non-muscle genes during myoblast differentiation.
Lorenzo J, Molla L, Amro E, Ibarra I, Ruf S, Neber C
Proc Natl Acad Sci U S A. 2024; 121(17):e2312330121.
PMID: 38625936
PMC: 11047093.
DOI: 10.1073/pnas.2312330121.
MoCoLo: a testing framework for motif co-localization.
Xu Q, Del Mundo I, Zewail-Foote M, Luke B, Vasquez K, Kowalski J
Brief Bioinform. 2024; 25(2).
PMID: 38521050
PMC: 10960634.
DOI: 10.1093/bib/bbae019.
Biological evolution and human cognition are analogous information processing systems.
Castro-Alonso J, Hidalgo A, Sweller J
Front Psychol. 2024; 14:1330345.
PMID: 38250110
PMC: 10796771.
DOI: 10.3389/fpsyg.2023.1330345.
Whole-exome sequencing explored mechanism of selpercatinib resistance in RET-rearranged lung adenocarcinoma transformation into small-cell lung cancer: a case report.
Peng Y, Zheng Z, Zewen W, Yanan L, Mingyan Z, Meili S
BMC Pulm Med. 2023; 23(1):492.
PMID: 38057798
PMC: 10698965.
DOI: 10.1186/s12890-023-02799-5.
The divergence of mutation rates and spectra across the Tree of Life.
Lynch M, Ali F, Lin T, Wang Y, Ni J, Long H
EMBO Rep. 2023; 24(10):e57561.
PMID: 37615267
PMC: 10561183.
DOI: 10.15252/embr.202357561.
Mutation Hotspots Found in Bladder Cancer Aid Prediction of Carcinogenic Risk in Normal Urothelium.
Grant S, Tang L, Wei L, Foster B, Paragh G, Huss W
Int J Mol Sci. 2023; 24(9).
PMID: 37175559
PMC: 10177765.
DOI: 10.3390/ijms24097852.
Changes in metabolic landscapes shape divergent but distinct mutational signatures and cytotoxic consequences of redox stress.
Degtyareva N, Placentra V, Gabel S, Klimczak L, Gordenin D, Wagner B
Nucleic Acids Res. 2023; 51(10):5056-5072.
PMID: 37078607
PMC: 10250236.
DOI: 10.1093/nar/gkad305.
Spontaneous deamination of cytosine to uracil is biased to the non-transcribed DNA strand in yeast.
Williams J, Zhu D, Garcia-Rubio M, Shaltz S, Aguilera A, Jinks-Robertson S
DNA Repair (Amst). 2023; 126:103489.
PMID: 37018983
PMC: 10494324.
DOI: 10.1016/j.dnarep.2023.103489.
Oncogenic Merkel Cell Polyomavirus T Antigen Truncating Mutations are Mediated by APOBEC3 Activity in Merkel Cell Carcinoma.
Soikkeli A, Kylaniemi M, Sihto H, Alinikula J
Cancer Res Commun. 2023; 2(11):1344-1354.
PMID: 36970060
PMC: 10035372.
DOI: 10.1158/2767-9764.CRC-22-0211.
Widely spaced and divergent inverted repeats become a potent source of chromosomal rearrangements in long single-stranded DNA regions.
Ait Saada A, Guo W, Costa A, Yang J, Wang J, Lobachev K
Nucleic Acids Res. 2023; 51(8):3722-3734.
PMID: 36919609
PMC: 10164571.
DOI: 10.1093/nar/gkad153.