MetaNetX/MNXref--reconciliation of Metabolites and Biochemical Reactions to Bring Together Genome-scale Metabolic Networks

Overview

Journal Nucleic Acids Res

Publisher Oxford University Press

Specialty Biochemistry

Date 2015 Nov 4

PMID 26527720

Citations 80

Authors

Sebastien Moretti

Olivier Martin

T Van Du Tran

Alan Bridge

Anne Morgat

Marco Pagni

Affiliations

Soon will be listed here.

Abstract

MetaNetX is a repository of genome-scale metabolic networks (GSMNs) and biochemical pathways from a number of major resources imported into a common namespace of chemical compounds, reactions, cellular compartments--namely MNXref--and proteins. The MetaNetX.org website (http://www.metanetx.org/) provides access to these integrated data as well as a variety of tools that allow users to import their own GSMNs, map them to the MNXref reconciliation, and manipulate, compare, analyze, simulate (using flux balance analysis) and export the resulting GSMNs. MNXref and MetaNetX are regularly updated and freely available.

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