» Articles » PMID: 26355662

Expanding the Clinical, Allelic, and Locus Heterogeneity of Retinal Dystrophies

Abstract

Purpose: Retinal dystrophies (RD) are heterogeneous hereditary disorders of the retina that are usually progressive in nature. The aim of this study was to clinically and molecularly characterize a large cohort of RD patients.

Methods: We have developed a next-generation sequencing assay that allows known RD genes to be sequenced simultaneously. We also performed mapping studies and exome sequencing on familial and on syndromic RD patients who tested negative on the panel.

Results: Our panel identified the likely causal mutation in >60% of the 292 RD families tested. Mapping studies on all 162 familial RD patients who tested negative on the panel identified two novel disease loci on Chr2:25,550,180-28,794,007 and Chr16:59,225,000-72,511,000. Whole-exome sequencing revealed the likely candidate as AGBL5 and CDH16, respectively. We also performed exome sequencing on negative syndromic RD cases and identified a novel homozygous truncating mutation in GNS in a family with the novel combination of mucopolysaccharidosis and RD. Moreover, we identified a homozygous truncating mutation in DNAJC17 in a family with an apparently novel syndrome of retinitis pigmentosa and hypogammaglobulinemia.

Conclusion: Our study expands the clinical and allelic spectrum of known RD genes, and reveals AGBL5, CDH16, and DNAJC17 as novel disease candidates.Genet Med 18 6, 554-562.

Citing Articles

Genetics and diagnostics of inherited retinal diseases in the era of whole genome sequencing.

Stohr H, Weber B Med Genet. 2025; 37(1):3-10.

PMID: 39963373 PMC: 11831235. DOI: 10.1515/medgen-2024-2049.


Expanding the Mutation Spectrum for Inherited Retinal Diseases.

Lynn J, Huang S, Trigler G, Kingsley R, Coussa R, Bennett L Genes (Basel). 2025; 16(1).

PMID: 39858579 PMC: 11764958. DOI: 10.3390/genes16010032.


Variants in the AGBL5 gene are responsible for autosomal recessive Retinitis pigmentosa with hearing loss.

Karali M, Garcia-Garcia G, Kaminska K, AlTalbishi A, Cancellieri F, Testa F Eur J Hum Genet. 2024; .

PMID: 39672920 DOI: 10.1038/s41431-024-01768-8.


Coding and non-coding variants in the ciliopathy gene CFAP410 cause early-onset non-syndromic retinal degeneration.

Sangermano R, Gupta P, Price C, Han J, Navarro J, Condroyer C NPJ Genom Med. 2024; 9(1):58.

PMID: 39516462 PMC: 11549414. DOI: 10.1038/s41525-024-00439-3.


Transcriptional precision in photoreceptor development and diseases - Lessons from 25 years of CRX research.

Zheng Y, Chen S Front Cell Neurosci. 2024; 18:1347436.

PMID: 38414750 PMC: 10896975. DOI: 10.3389/fncel.2024.1347436.


References
1.
Alkuraya F . Genetics and genomic medicine in Saudi Arabia. Mol Genet Genomic Med. 2014; 2(5):369-78. PMC: 4190871. DOI: 10.1002/mgg3.97. View

2.
Kelley L, Sternberg M . Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc. 2009; 4(3):363-71. DOI: 10.1038/nprot.2009.2. View

3.
Hoover-Fong J, Sobreira N, Jurgens J, Modaff P, Blout C, Moser A . Mutations in PCYT1A, encoding a key regulator of phosphatidylcholine metabolism, cause spondylometaphyseal dysplasia with cone-rod dystrophy. Am J Hum Genet. 2014; 94(1):105-12. PMC: 3882727. DOI: 10.1016/j.ajhg.2013.11.018. View

4.
Shanks M, Downes S, Copley R, Lise S, Broxholme J, Hudspith K . Next-generation sequencing (NGS) as a diagnostic tool for retinal degeneration reveals a much higher detection rate in early-onset disease. Eur J Hum Genet. 2012; 21(3):274-80. PMC: 3573204. DOI: 10.1038/ejhg.2012.172. View

5.
. Comprehensive gene panels provide advantages over clinical exome sequencing for Mendelian diseases. Genome Biol. 2015; 16:134. PMC: 4499193. DOI: 10.1186/s13059-015-0693-2. View