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Encoded Library Synthesis Using Chemical Ligation and the Discovery of SEH Inhibitors from a 334-Million Member Library

Overview
Journal Sci Rep
Specialty Science
Date 2015 Jun 11
PMID 26061191
Citations 36
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Abstract

A chemical ligation method for construction of DNA-encoded small-molecule libraries has been developed. Taking advantage of the ability of the Klenow fragment of DNA polymerase to accept templates with triazole linkages in place of phosphodiesters, we have designed a strategy for chemically ligating oligonucleotide tags using cycloaddition chemistry. We have utilized this strategy in the construction and selection of a small molecule library, and successfully identified inhibitors of the enzyme soluble epoxide hydrolase.

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References
1.
Gilmartin A, Faitg T, Richter M, Groy A, Seefeld M, Darcy M . Allosteric Wip1 phosphatase inhibition through flap-subdomain interaction. Nat Chem Biol. 2014; 10(3):181-7. DOI: 10.1038/nchembio.1427. View

2.
Clark M . Selecting chemicals: the emerging utility of DNA-encoded libraries. Curr Opin Chem Biol. 2010; 14(3):396-403. DOI: 10.1016/j.cbpa.2010.02.017. View

3.
El-Sagheer A, Sanzone A, Gao R, Tavassoli A, Brown T . Biocompatible artificial DNA linker that is read through by DNA polymerases and is functional in Escherichia coli. Proc Natl Acad Sci U S A. 2011; 108(28):11338-43. PMC: 3136318. DOI: 10.1073/pnas.1101519108. View

4.
Kleiner R, Dumelin C, Liu D . Small-molecule discovery from DNA-encoded chemical libraries. Chem Soc Rev. 2011; 40(12):5707-17. PMC: 4435721. DOI: 10.1039/c1cs15076f. View

5.
Gentile G, Merlo G, Pozzan A, Bernasconi G, Bax B, Bamborough P . 5-Aryl-4-carboxamide-1,3-oxazoles: potent and selective GSK-3 inhibitors. Bioorg Med Chem Lett. 2012; 22(5):1989-94. DOI: 10.1016/j.bmcl.2012.01.034. View