Optimized Protocol for Simple Extraction of High-Quality Genomic DNA from Clostridium Difficile for Whole-Genome Sequencing
Overview
Affiliations
Successful sequencing of the Clostridium difficile genome requires high-quality genomic DNA (gDNA) as the starting material. gDNA extraction using conventional methods is laborious. We describe here an optimized method for the simple extraction of C. difficile gDNA using the QIAamp DNA minikit, which yielded high-quality sequence reads on the Illumina MiSeq platform.
Alanis E, Aguilar F, Banaei N, Dean F, Villarreal A, Alanis M Microbiol Spectr. 2024; 12(3):e0277323.
PMID: 38329351 PMC: 10913371. DOI: 10.1128/spectrum.02773-23.
Cook L, Wong M, Rees W, Schick A, Lisko D, Lunken G Inflamm Bowel Dis. 2023; 30(5):820-828.
PMID: 37874904 PMC: 11063544. DOI: 10.1093/ibd/izad238.
Kamboj M, McMillen T, Syed M, Chow H, Jani K, Aslam A J Clin Microbiol. 2020; 59(2).
PMID: 33177119 PMC: 8111118. DOI: 10.1128/JCM.01955-20.
Babady N, Aslam A, McMillen T, Syed M, Zehir A, Kamboj M J Hosp Infect. 2020; 109:96-100.
PMID: 33171187 PMC: 8456756. DOI: 10.1016/j.jhin.2020.10.028.
Kivata M, Mbuchi M, Eyase F, Bulimo W, Kyanya C, Oundo V BMC Infect Dis. 2020; 20(1):703.
PMID: 32977759 PMC: 7517623. DOI: 10.1186/s12879-020-05398-5.