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Omic Research in Termites: an Overview and a Roadmap

Overview
Journal Front Genet
Date 2015 Mar 31
PMID 25821456
Citations 21
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Abstract

Many recent breakthroughs in our understanding of termite biology have been facilitated by "omics" research. Omic science seeks to collectively catalog, quantify, and characterize pools of biological molecules that translate into structure, function, and life processes of an organism. Biological molecules in this context include genomic DNA, messenger RNA, proteins, and other biochemicals. Other permutations of omics that apply to termites include sociogenomics, which seeks to define social life in molecular terms (e.g., behavior, sociality, physiology, symbiosis, etc.) and digestomics, which seeks to define the collective pool of host and symbiont genes that collaborate to achieve high-efficiency lignocellulose digestion in the termite gut. This review covers a wide spectrum of termite omic studies from the past 15 years. Topics covered include a summary of terminology, the various kinds of omic efforts that have been undertaken, what has been revealed, and to a degree, what the results mean. Although recent omic efforts have contributed to a better understanding of many facets of termite and symbiont biology, and have created important new resources for many species, significant knowledge gaps still remain. Crossing these gaps can best be done by applying new omic resources within multi-dimensional (i.e., functional, translational, and applied) research programs.

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References
1.
Hayashi Y, Shigenobu S, Watanabe D, Toga K, Saiki R, Shimada K . Construction and characterization of normalized cDNA libraries by 454 pyrosequencing and estimation of DNA methylation levels in three distantly related termite species. PLoS One. 2013; 8(9):e76678. PMC: 3787108. DOI: 10.1371/journal.pone.0076678. View

2.
Watanabe H, Noda H, Tokuda G, Lo N . A cellulase gene of termite origin. Nature. 1998; 394(6691):330-1. DOI: 10.1038/28527. View

3.
Liu N, Zhang L, Zhou H, Zhang M, Yan X, Wang Q . Metagenomic insights into metabolic capacities of the gut microbiota in a fungus-cultivating termite (Odontotermes yunnanensis). PLoS One. 2013; 8(7):e69184. PMC: 3714238. DOI: 10.1371/journal.pone.0069184. View

4.
Kohler T, Dietrich C, Scheffrahn R, Brune A . High-resolution analysis of gut environment and bacterial microbiota reveals functional compartmentation of the gut in wood-feeding higher termites (Nasutitermes spp.). Appl Environ Microbiol. 2012; 78(13):4691-701. PMC: 3370480. DOI: 10.1128/AEM.00683-12. View

5.
Roose-Amsaleg C, Brygoo Y, Harry M . Ascomycete diversity in soil-feeding termite nests and soils from a tropical rainforest. Environ Microbiol. 2004; 6(5):462-9. DOI: 10.1111/j.1462-2920.2004.00579.x. View