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New Methods in Time-resolved Laue Pump-probe Crystallography at Synchrotron Sources

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Date 2015 Feb 28
PMID 25723930
Citations 7
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Abstract

Newly developed methods for time-resolved studies using the polychromatic and in particular the pink-Laue technique, suitable for medium and small-size unit cells typical in chemical crystallography, are reviewed. The order of the sections follows that of a typical study, starting with a description of the pink-Laue technique, followed by the strategy of data collection for analysis with the RATIO method. Novel procedures are described for spot integration, orientation matrix determination for relatively sparse diffraction patterns, scaling of multi-crystal data sets, use of Fourier maps for initial assessment and analysis of results, and least-squares refinement of photo-induced structural and thermal changes. In the calculation of Fourier maps a ground-state structure model, typically based on monochromatic results, is employed as reference, and the laser-ON structure factors for the Fourier summations are obtained by multiplying the reference ground-state structure factors by the square root of the experimental ON/OFF ratios. A schematic of the procedure followed is included in the conclusion section.

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References
1.
Bourgeois D, Schotte F, Brunori M, Vallone B . Time-resolved methods in biophysics. 6. Time-resolved Laue crystallography as a tool to investigate photo-activated protein dynamics. Photochem Photobiol Sci. 2007; 6(10):1047-56. DOI: 10.1039/b704249c. View

2.
Moffat K . Time-resolved biochemical crystallography: a mechanistic perspective. Chem Rev. 2001; 101(6):1569-81. DOI: 10.1021/cr990039q. View

3.
Coppens P, Vorontsov I, Graber T, Gembicky M, Kovalevsky A . The structure of short-lived excited states of molecular complexes by time-resolved X-ray diffraction. Acta Crystallogr A. 2005; 61(Pt 2):162-72. DOI: 10.1107/S0108767304029551. View

4.
Kalinowski J, Fournier B, Makal A, Coppens P . The LaueUtil toolkit for Laue photocrystallography. II. Spot finding and integration. J Synchrotron Radiat. 2012; 19(Pt 4):637-46. PMC: 3380659. DOI: 10.1107/S0909049512022637. View

5.
Bourgeois D, Wagner U, Wulff M . Towards automated Laue data processing: application to the choice of optimal X-ray spectrum. Acta Crystallogr D Biol Crystallogr. 2000; 56(Pt 8):973-85. DOI: 10.1107/s0907444900006958. View