Complete Maps of IS1, IS2, IS3, IS4, IS5, IS30 and IS150 Locations in Escherichia Coli K12

Overview

Journal Mol Gen Genet

Specialties Genetics
Molecular Biology

Date 1989 Dec 1

PMID 2558284

Citations 38

Authors

R P Birkenbihl

W VIELMETTER

Affiliations

Soon will be listed here.

Abstract

In this paper complete distribution maps are presented of the seven IS elements 1, 2, 3, 4, 5, 30 and 150. These maps were obtained during the construction of an almost complete restriction map of the Escherichia coli genome of K12 strain BHB2600. The positions of IS elements were correlated to this map. The distribution of integration sites of all IS types is nonrandom. Besides a large gap from 79 min to 96 min, there is a pronounced IS cluster at 6 min and another at 97 min, map locations that have low gene incidences on the classical map. One cluster coincides with a region of IS induced rearrangements. The IS distribution pattern was compared to patterns of strains W3110 and HB101.

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References

Reynolds A, Felton J, Wright A . Insertion of DNA activates the cryptic bgl operon in E. coli K12. Nature. 1981; 293(5834):625-9. DOI: 10.1038/293625a0. View

Barcellini-Couget S, Galucci P, Bouche J . Escherichia coli dicB operon includes a truncated IS2 element. Nucleic Acids Res. 1988; 16(21):10388. PMC: 338888. DOI: 10.1093/nar/16.21.10388. View

Schwartz E, Kroger M, Rak B . IS150: distribution, nucleotide sequence and phylogenetic relationships of a new E. coli insertion element. Nucleic Acids Res. 1988; 16(14B):6789-802. PMC: 338333. DOI: 10.1093/nar/16.14.6789. View

Ish-Horowicz D, Burke J . Rapid and efficient cosmid cloning. Nucleic Acids Res. 1981; 9(13):2989-98. PMC: 327326. DOI: 10.1093/nar/9.13.2989. View

Ghosal D, Sommer H, Saedler H . Nucleotide sequence of the transposable DNA-element IS2. Nucleic Acids Res. 1979; 6(3):1111-22. PMC: 327757. DOI: 10.1093/nar/6.3.1111. View

Klaer R, Starlinger P . IS4 at its chromosomal site in E. coli K12. Mol Gen Genet. 1980; 178(2):285-91. DOI: 10.1007/BF00270474. View

Saedler H, Cornelis G, Cullum J, Schumacher B, Sommer H . IS1-mediated DNA rearrangements. Cold Spring Harb Symp Quant Biol. 1981; 45 Pt 1:93-8. DOI: 10.1101/sqb.1981.045.01.017. View

Blasband A, Marcotte Jr W, Schnaitman C . Structure of the lc and nmpC outer membrane porin protein genes of lambdoid bacteriophage. J Biol Chem. 1986; 261(27):12723-32. View

Bachmann B, Low K . Linkage map of Escherichia coli K-12, edition 6. Microbiol Rev. 1980; 44(1):1-56. PMC: 373233. DOI: 10.1128/mr.44.1.1-56.1980. View

10.

Dalrymple B, Caspers P, Arber W . Nucleotide sequence of the prokaryotic mobile genetic element IS30. EMBO J. 1984; 3(9):2145-9. PMC: 557656. DOI: 10.1002/j.1460-2075.1984.tb02104.x. View

11.

Engler J, Van Bree M . The nucleotide sequence and protein-coding capability of the transposable element IS5. Gene. 1981; 14(3):155-63. DOI: 10.1016/0378-1119(81)90111-6. View

12.

Virolle M, Gelugne J, Bejar S, Bouche J . Origin of Escherichia coli K-12 Hfr B7. J Bacteriol. 1983; 153(2):610-5. PMC: 221676. DOI: 10.1128/jb.153.2.610-615.1983. View

13.

Boyer H . A complementation analysis of the restriction and modification of DNA in Escherichia coli. J Mol Biol. 1969; 41(3):459-72. DOI: 10.1016/0022-2836(69)90288-5. View

14.

Gamas P, Chandler M, Prentki P, Galas D . Escherichia coli integration host factor binds specifically to the ends of the insertion sequence IS1 and to its major insertion hot-spot in pBR322. J Mol Biol. 1987; 195(2):261-72. DOI: 10.1016/0022-2836(87)90648-6. View

15.

Bachmann B . Linkage map of Escherichia coli K-12, edition 7. Microbiol Rev. 1983; 47(2):180-230. PMC: 281571. DOI: 10.1128/mr.47.2.180-230.1983. View

16.

Charlier D, Piette J, Glansdorff N . IS3 can function as a mobile promoter in E. coli. Nucleic Acids Res. 1982; 10(19):5935-48. PMC: 320941. DOI: 10.1093/nar/10.19.5935. View

17.

Louarn J, Bouche J, Legendre F, Louarn J, PATTE J . Characterization and properties of very large inversions of the E. coli chromosome along the origin-to-terminus axis. Mol Gen Genet. 1985; 201(3):467-76. DOI: 10.1007/BF00331341. View

18.

Jaurin B, Normark S . Insertion of IS2 creates a novel ampC promoter in Escherichia coli. Cell. 1983; 32(3):809-16. DOI: 10.1016/0092-8674(83)90067-3. View

19.

Calos M, Miller J . Transposable elements. Cell. 1980; 20(3):579-95. DOI: 10.1016/0092-8674(80)90305-0. View

20.

Saedler H, Heiss B . Multiple copies of the insertion-DNA sequences IS1 and IS2 in the chromosome of E. coli K-12. Mol Gen Genet. 1973; 122(3):267-77. DOI: 10.1007/BF00278602. View