» Articles » PMID: 25540358

Genome Sequence of Afipia Felis Strain 76713, Isolated in Hospital Water Using an Amoeba Co-Culture Procedure

Overview
Journal Genome Announc
Date 2014 Dec 26
PMID 25540358
Citations 1
Authors
Affiliations
Soon will be listed here.
Abstract

Afipia felis is a Gram-negative alphaproteobacterium originally described as the agent of cat-scratch disease (CSD). We sequenced the genome from a strain of A. felis, which was recovered from a hospital water sample using an amoebal co-culture procedure. It is composed of 3,989,646 bp, with a G+C content of 61.27% and encodes 4,068 protein-coding genes and 53 RNA genes.

Citing Articles

Community profiling of the intestinal microbial community of juvenile Hammerhead Sharks (Sphyrna lewini) from the Rewa Delta, Fiji.

Juste-Poinapen N, Yang L, Ferreira M, Poinapen J, Rico C Sci Rep. 2019; 9(1):7182.

PMID: 31073209 PMC: 6509141. DOI: 10.1038/s41598-019-43522-x.

References
1.
Punta M, Coggill P, Eberhardt R, Mistry J, Tate J, Boursnell C . The Pfam protein families database. Nucleic Acids Res. 2011; 40(Database issue):D290-301. PMC: 3245129. DOI: 10.1093/nar/gkr1065. View

2.
Brenner D, Hollis D, MOSS C, English C, Hall G, Vincent J . Proposal of Afipia gen. nov., with Afipia felis sp. nov. (formerly the cat scratch disease bacillus), Afipia clevelandensis sp. nov. (formerly the Cleveland Clinic Foundation strain), Afipia broomeae sp. nov., and three unnamed genospecies. J Clin Microbiol. 1991; 29(11):2450-60. PMC: 270354. DOI: 10.1128/jcm.29.11.2450-2460.1991. View

3.
Boetzer M, Pirovano W . Toward almost closed genomes with GapFiller. Genome Biol. 2012; 13(6):R56. PMC: 3446322. DOI: 10.1186/gb-2012-13-6-r56. View

4.
Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy S . Rfam: an RNA family database. Nucleic Acids Res. 2003; 31(1):439-41. PMC: 165453. DOI: 10.1093/nar/gkg006. View

5.
La Scola B, Raoult D . Afipia felis in hospital water supply in association with free-living amoebae. Lancet. 1999; 353(9161):1330. DOI: 10.1016/s0140-6736(99)00906-x. View