Quantification of Variability in Trichome Patterns
Overview
Affiliations
While pattern formation is studied in various areas of biology, little is known about the noise leading to variations between individual realizations of the pattern. One prominent example for de novo pattern formation in plants is the patterning of trichomes on Arabidopsis leaves, which involves genetic regulation and cell-to-cell communication. These processes are potentially variable due to, e.g., the abundance of cell components or environmental conditions. To elevate the understanding of regulatory processes underlying the pattern formation it is crucial to quantitatively analyze the variability in naturally occurring patterns. Here, we review recent approaches toward characterization of noise on trichome initiation. We present methods for the quantification of spatial patterns, which are the basis for data-driven mathematical modeling and enable the analysis of noise from different sources. Besides the insight gained on trichome formation, the examination of observed trichome patterns also shows that highly regulated biological processes can be substantially affected by variability.
Stochastic Turing patterns of trichomes in leaves.
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PMID: 37824528 PMC: 10589648. DOI: 10.1073/pnas.2309616120.
Using quantitative methods to understand leaf epidermal development.
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PMID: 37077990 PMC: 10097589. DOI: 10.1017/qpb.2022.25.
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PMID: 32709158 PMC: 7412270. DOI: 10.3390/plants9070909.
The Dynamic Genetic-Hormonal Regulatory Network Controlling the Trichome Development in Leaves.
Fambrini M, Pugliesi C Plants (Basel). 2019; 8(8).
PMID: 31357744 PMC: 6724107. DOI: 10.3390/plants8080253.
Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the sepal.
Meyer H, Teles J, Formosa-Jordan P, Refahi Y, San-Bento R, Ingram G Elife. 2017; 6.
PMID: 28145865 PMC: 5333958. DOI: 10.7554/eLife.19131.