Shehzad S, Kim H
BMB Rep. 2024; 58(1):41-51.
PMID: 39701027
PMC: 11788529.
Sridalla K, Woodhouse M, Hu J, Scheer J, Ferlez B, Crickard J
Nucleic Acids Res. 2024; 52(12):7031-7048.
PMID: 38828785
PMC: 11229335.
DOI: 10.1093/nar/gkae474.
Pangeni S, Biswas G, Kaushik V, Kuppa S, Yang O, Lin C
J Mol Biol. 2024; 436(6):168491.
PMID: 38360091
PMC: 10949852.
DOI: 10.1016/j.jmb.2024.168491.
Hu J, Ferlez B, Dau J, Crickard J
Nucleic Acids Res. 2023; 51(21):11688-11705.
PMID: 37850655
PMC: 10681728.
DOI: 10.1093/nar/gkad848.
Zuo L, Ding J, Qi Z
Biophys Rep. 2023; 8(2):80-89.
PMID: 37287827
PMC: 10195810.
DOI: 10.52601/bpr.2022.210027.
Assembly path dependence of telomeric DNA compaction by TRF1, TIN2, and SA1.
Liu M, Pan H, Kaur P, Wang L, Jin M, Detwiler A
Biophys J. 2023; 122(10):1822-1832.
PMID: 37081787
PMC: 10209029.
DOI: 10.1016/j.bpj.2023.04.014.
Probing DNA-protein interactions using single-molecule diffusivity contrast.
Wilson H, Lee M, Wang Q
Biophys Rep (N Y). 2022; 1(1):100009.
PMID: 36425309
PMC: 9680706.
DOI: 10.1016/j.bpr.2021.100009.
Single-Molecule Imaging of the Phase Separation-Modulated DNA Compaction to Study Transcriptional Repression.
Zuo L, Lai L, Qi Z
Methods Mol Biol. 2022; 2563:215-223.
PMID: 36227475
DOI: 10.1007/978-1-0716-2663-4_10.
Quantitative parameters of bacterial RNA polymerase open-complex formation, stabilization and disruption on a consensus promoter.
Bera S, America P, Maatsola S, Seifert M, Ostrofet E, Cnossen J
Nucleic Acids Res. 2022; 50(13):7511-7528.
PMID: 35819191
PMC: 9303404.
DOI: 10.1093/nar/gkac560.
Studying R-Loop Recognizing Proteins Using Single-Molecule DNA Curtain Technique and Electrophoretic Mobility Shift Assay.
Cheon N, Lee J
Methods Mol Biol. 2022; 2528:253-269.
PMID: 35704196
DOI: 10.1007/978-1-0716-2477-7_16.
Efficient golden gate assembly of DNA constructs for single molecule force spectroscopy and imaging.
Bell N, Molloy J
Nucleic Acids Res. 2022; 50(13):e77.
PMID: 35489063
PMC: 9303394.
DOI: 10.1093/nar/gkac300.
Structure-activity relationships at a nucleobase-stacking tryptophan required for chemomechanical coupling in the DNA resecting motor-nuclease AdnAB.
Warren G, Meir A, Wang J, Patel D, Greene E, Shuman S
Nucleic Acids Res. 2021; 50(2):952-961.
PMID: 34967418
PMC: 8789073.
DOI: 10.1093/nar/gkab1270.
Observing Protein One-Dimensional Sliding: Methodology and Biological Significance.
Yang X, Liu J
Biomolecules. 2021; 11(11).
PMID: 34827616
PMC: 8615959.
DOI: 10.3390/biom11111618.
Large-scale preparation of fluorescence multiplex host cell reactivation (FM-HCR) reporters.
Piett C, Pecen T, Laverty D, Nagel Z
Nat Protoc. 2021; 16(9):4265-4298.
PMID: 34363069
PMC: 9272811.
DOI: 10.1038/s41596-021-00577-3.
Clutch mechanism of chemomechanical coupling in a DNA resecting motor nuclease.
Unciuleac M, Meir A, Xue C, Warren G, Greene E, Shuman S
Proc Natl Acad Sci U S A. 2021; 118(11).
PMID: 33836607
PMC: 7980473.
DOI: 10.1073/pnas.2023955118.
Thermoplastic nanofluidic devices for identifying abasic sites in single DNA molecules.
Vaidyanathan S, Weerakoon-Ratnayake K, Uba F, Hu B, Kaufman D, Choi J
Lab Chip. 2021; 21(8):1579-1589.
PMID: 33651049
PMC: 8293902.
DOI: 10.1039/d0lc01038c.
Time for remodeling: SNF2-family DNA translocases in replication fork metabolism and human disease.
Joseph S, Taglialatela A, Leuzzi G, Huang J, Cuella-Martin R, Ciccia A
DNA Repair (Amst). 2020; 95:102943.
PMID: 32971328
PMC: 8092973.
DOI: 10.1016/j.dnarep.2020.102943.
Real-time compaction of nanoconfined DNA by an intrinsically disordered macromolecular counterion.
Sharma R, Kk S, Holmstrom E, Westerlund F
Biochem Biophys Res Commun. 2020; 533(1):175-180.
PMID: 32951838
PMC: 7577930.
DOI: 10.1016/j.bbrc.2020.06.051.
A Thermosensitive, Phase-Variable Epigenetic Switch: Revisited.
Zamora M, Ziegler C, Freddolino L, Freddolino P, Wolfe A
Microbiol Mol Biol Rev. 2020; 84(3).
PMID: 32727743
PMC: 7392537.
DOI: 10.1128/MMBR.00030-17.
Synthesis of DNA Origami Scaffolds: Current and Emerging Strategies.
Bush J, Singh S, Vargas M, Oktay E, Hu C, Veneziano R
Molecules. 2020; 25(15).
PMID: 32722650
PMC: 7435391.
DOI: 10.3390/molecules25153386.