» Articles » PMID: 24971961

Developments in Optics and Performance at BL13-XALOC, the Macromolecular Crystallography Beamline at the ALBA Synchrotron

Overview
Date 2014 Jun 28
PMID 24971961
Citations 79
Authors
Affiliations
Soon will be listed here.
Abstract

BL13-XALOC is currently the only macromolecular crystallography beamline at the 3 GeV ALBA synchrotron near Barcelona, Spain. The optics design is based on an in-vacuum undulator, a Si(111) channel-cut crystal monochromator and a pair of KB mirrors. It allows three main operation modes: a focused configuration, where both mirrors can focus the beam at the sample position to 52 µm × 5.5 µm FWHM (H × V); a defocused configuration that can match the size of the beam to the dimensions of the crystals or to focus the beam at the detector; and an unfocused configuration, where one or both mirrors are removed from the photon beam path. To achieve a uniform defocused beam, the slope errors of the mirrors were reduced down to 55 nrad RMS by employing a novel method that has been developed at the ALBA high-accuracy metrology laboratory. Thorough commissioning with X-ray beam and user operation has demonstrated an excellent energy and spatial stability of the beamline. The end-station includes a high-accuracy single-axis diffractometer, a removable mini-kappa stage, an automated sample-mounting robot and a photon-counting detector that allows shutterless operation. The positioning tables of the diffractometer and the detector are based on a novel and highly stable design. This equipment, together with the operation flexibility of the beamline, allows a large variety of types of crystals to be tackled, from medium-sized crystals with large unit-cell parameters to microcrystals. Several examples of data collections measured during beamline commissioning are described. The beamline started user operation on 18 July 2012.

Citing Articles

Analysis of Protein Inhibitors of Trypsin in Quinoa, Amaranth and Lupine Seeds. Selection and Deep Structure-Function Characterization of the Species.

Hernandez de la Torre M, Covaleda-Cortes G, Montesinos L, Covaleda D, Ortiz J, Pinol J Int J Mol Sci. 2025; 26(3).

PMID: 39940919 PMC: 11817793. DOI: 10.3390/ijms26031150.


ChIP-seq and structural analyses delineating the regulatory mechanism of master regulator EsrB in .

Zhang B, Zhang Y, Liu J, Reverter D, Wang Q, Choi S Appl Environ Microbiol. 2024; 90(12):e0180524.

PMID: 39545739 PMC: 11653779. DOI: 10.1128/aem.01805-24.


Crystal structure of the HMGA AT-hook 1 domain bound to the minor groove of AT-rich DNA and inhibition by antikinetoplastid drugs.

Nue-Martinez J, Maturana M, Lagartera L, Rodriguez-Gutierrez J, Boer R, Campos J Sci Rep. 2024; 14(1):26173.

PMID: 39478017 PMC: 11526092. DOI: 10.1038/s41598-024-77522-3.


Structural and Biochemical Characterization of a New Phage-Encoded Muramidase, KTN6 Gp46.

Sanz-Gaitero M, De Maesschalck V, Patel A, Longin H, van Noort V, Rodriguez-Rubio L Phage (New Rochelle). 2024; 5(2):53-62.

PMID: 39119210 PMC: 11304755. DOI: 10.1089/phage.2023.0040.


Broad-spectrum ubiquitin/ubiquitin-like deconjugation activity of the rhizobial effector NopD from Bradyrhizobium (sp. XS1150).

Li Y, Perez-Gil J, Lois L, Varejao N, Reverter D Commun Biol. 2024; 7(1):644.

PMID: 38802699 PMC: 11130253. DOI: 10.1038/s42003-024-06344-w.


References
1.
Diederichs K . Quantifying instrument errors in macromolecular X-ray data sets. Acta Crystallogr D Biol Crystallogr. 2010; 66(Pt 6):733-40. DOI: 10.1107/S0907444910014836. View

2.
Incardona M, Bourenkov G, Levik K, Pieritz R, Popov A, Svensson O . EDNA: a framework for plugin-based applications applied to X-ray experiment online data analysis. J Synchrotron Radiat. 2009; 16(Pt 6):872-9. DOI: 10.1107/S0909049509036681. View

3.
Bacarizo J, Camara-Artigas A . Atomic resolution structures of the c-Src SH3 domain in complex with two high-affinity peptides from classes I and II. Acta Crystallogr D Biol Crystallogr. 2013; 69(Pt 5):756-66. DOI: 10.1107/S0907444913001522. View

4.
Kraft P, Bergamaschi A, Broennimann C, Dinapoli R, Eikenberry E, Henrich B . Performance of single-photon-counting PILATUS detector modules. J Synchrotron Radiat. 2009; 16(Pt 3):368-75. PMC: 2678015. DOI: 10.1107/S0909049509009911. View

5.
Bourenkov G, Popov A . A quantitative approach to data-collection strategies. Acta Crystallogr D Biol Crystallogr. 2005; 62(Pt 1):58-64. DOI: 10.1107/S0907444905033998. View