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Draft Genome Sequence of the Lignin-Degrading Burkholderia Sp. Strain LIG30, Isolated from Wet Tropical Forest Soil

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Journal Genome Announc
Date 2014 Jun 21
PMID 24948777
Citations 18
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Abstract

Burkholderia species are common soil Betaproteobacteria capable of degrading recalcitrant aromatic compounds and xenobiotics. Burkholderia sp. strain LIG30 was isolated from wet tropical forest soil and is capable of utilizing lignin as a sole carbon source. Here we report the draft genome sequence of Burkholderia sp. strain LIG30.

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References
1.
Coenye T, Vandamme P . Diversity and significance of Burkholderia species occupying diverse ecological niches. Environ Microbiol. 2003; 5(9):719-29. DOI: 10.1046/j.1462-2920.2003.00471.x. View

2.
DeSantis T, Hugenholtz P, Larsen N, Rojas M, Brodie E, Keller K . Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol. 2006; 72(7):5069-72. PMC: 1489311. DOI: 10.1128/AEM.03006-05. View

3.
Woo H, Hazen T, Simmons B, DeAngelis K . Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils. Syst Appl Microbiol. 2013; 37(1):60-7. DOI: 10.1016/j.syapm.2013.10.001. View

4.
Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy S . Rfam: an RNA family database. Nucleic Acids Res. 2003; 31(1):439-41. PMC: 165453. DOI: 10.1093/nar/gkg006. View

5.
Vial L, Groleau M, Dekimpe V, Deziel E . Burkholderia diversity and versatility: an inventory of the extracellular products. J Microbiol Biotechnol. 2007; 17(9):1407-29. View