» Articles » PMID: 24928192

Deoxyribonucleotides As Genetic and Metabolic Regulators

Overview
Journal FASEB J
Specialties Biology
Physiology
Date 2014 Jun 15
PMID 24928192
Citations 34
Authors
Affiliations
Soon will be listed here.
Abstract

For >35 yr, we have known that the accuracy of DNA replication is controlled in large part by the relative concentrations of the 4 canonical deoxyribonucleoside 5'-triphosphates (dNTPs) at the replisome. Since this field was last reviewed, ∼8 yr ago, there has been increased understanding of the mutagenic pathways as they occur in living cells. At the same time, aspects of deoxyribonucleotide metabolism have been shown to be critically involved in processes as diverse as cell cycle control, protooncogene expression, cellular defense against HIV infection, replication rate control, telomere length control, and mitochondrial function. Evidence supports a relationship between dNTP pools and microsatellite repeat instability. Relationships between dNTP synthesis and breakdown in controlling steady-state pools have become better defined. In addition, new experimental approaches have allowed definitive analysis of mutational pathways induced by dNTP pool abnormalities, both in Escherichia coli and in yeast. Finally, ribonucleoside triphosphate (rNTP) pools have been shown to be critical determinants of DNA replication fidelity. These developments are discussed in this review article.

Citing Articles

Exploring the Frontiers of Cell Temperature Measurement and Thermogenesis.

Zhu H, Xu H, Zhang Y, Brodsky J, Gablech I, Korabecna M Adv Sci (Weinh). 2024; 12(1):e2402135.

PMID: 39467049 PMC: 11714221. DOI: 10.1002/advs.202402135.


Understanding the interplay between dNTP metabolism and genome stability in cancer.

Yague-Capilla M, Rudd S Dis Model Mech. 2024; 17(8).

PMID: 39206868 PMC: 11381932. DOI: 10.1242/dmm.050775.


SOS genes are rapidly induced while translesion synthesis polymerase activity is temporally regulated.

Bergum O, Singleton A, Rost L, Bodein A, Scott-Boyer M, Rye M Front Microbiol. 2024; 15:1373344.

PMID: 38596376 PMC: 11002266. DOI: 10.3389/fmicb.2024.1373344.


Warm Cells, Hot Mitochondria: Achievements and Problems of Ultralocal Thermometry.

Kruglov A, Romshin A, Nikiforova A, Plotnikova A, Vlasov I Int J Mol Sci. 2023; 24(23).

PMID: 38069275 PMC: 10707128. DOI: 10.3390/ijms242316955.


Ubiquitous, B-dependent virioplankton utilizing ribonucleotide-triphosphate reductase demonstrate interseasonal dynamics and associate with a diverse range of bacterial hosts in the pelagic ocean.

Wu L, Piedade G, Moore R, Harrison A, Martins A, Bidle K ISME Commun. 2023; 3(1):108.

PMID: 37789093 PMC: 10547690. DOI: 10.1038/s43705-023-00306-9.


References
1.
Schaaper R, Mathews C . Mutational consequences of dNTP pool imbalances in E. coli. DNA Repair (Amst). 2012; 12(1):73-9. PMC: 3534869. DOI: 10.1016/j.dnarep.2012.10.011. View

2.
Van Cor-Hosmer S, Kim D, Daly M, Daddacha W, Kim B . Restricted 5'-end gap repair of HIV-1 integration due to limited cellular dNTP concentrations in human primary macrophages. J Biol Chem. 2013; 288(46):33253-62. PMC: 3829171. DOI: 10.1074/jbc.M113.486787. View

3.
Davidson M, Katou Y, Keszthelyi A, Sing T, Xia T, Ou J . Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype. EMBO J. 2012; 31(4):895-907. PMC: 3280564. DOI: 10.1038/emboj.2011.485. View

4.
Mathews C, Sinha N . Are DNA precursors concentrated at replication sites?. Proc Natl Acad Sci U S A. 1982; 79(2):302-6. PMC: 345714. DOI: 10.1073/pnas.79.2.302. View

5.
Goldstone D, Ennis-Adeniran V, Hedden J, Groom H, Rice G, Christodoulou E . HIV-1 restriction factor SAMHD1 is a deoxynucleoside triphosphate triphosphohydrolase. Nature. 2011; 480(7377):379-82. DOI: 10.1038/nature10623. View