Floudas C, Sarkizova S, Ceccarelli M, Zheng W
J Immunother Cancer. 2025; 13(1).
PMID: 39848687
PMC: 11784169.
DOI: 10.1136/jitc-2024-010569.
Raghavan R, Friedrich M, King I, Vo S, Strebinger D, Lash B
Nat Commun. 2025; 16(1):105.
PMID: 39747875
PMC: 11696374.
DOI: 10.1038/s41467-024-55522-1.
Xu Z, Song J, Zhang H, Wei Z, Wei D, Yang G
Sci Rep. 2024; 14(1):23995.
PMID: 39402093
PMC: 11473516.
DOI: 10.1038/s41598-024-74221-x.
Tuse D, McNulty M, McDonald K, Buchman L
Front Plant Sci. 2024; 15:1426239.
PMID: 39239203
PMC: 11374769.
DOI: 10.3389/fpls.2024.1426239.
Tong M, Palmer N, Dailamy A, Kumar A, Khaliq H, Han S
Nat Biomed Eng. 2024; 9(1):109-126.
PMID: 39187662
DOI: 10.1038/s41551-024-01245-z.
Modulation of the pharmacokinetics of soluble ACE2 decoy receptors through glycosylation.
Skeeters S, Bagale K, Stepanyuk G, Thieker D, Aguhob A, Chan K
Mol Ther Methods Clin Dev. 2024; 32(3):101301.
PMID: 39185275
PMC: 11342882.
DOI: 10.1016/j.omtm.2024.101301.
Graph-pMHC: graph neural network approach to MHC class II peptide presentation and antibody immunogenicity.
Thrift W, Perera J, Cohen S, Lounsbury N, Gurung H, Rose C
Brief Bioinform. 2024; 25(3).
PMID: 38555476
PMC: 10981672.
DOI: 10.1093/bib/bbae123.
A suite of designed protein cages using machine learning and protein fragment-based protocols.
Meador K, Castells-Graells R, Aguirre R, Sawaya M, Arbing M, Sherman T
Structure. 2024; 32(6):751-765.e11.
PMID: 38513658
PMC: 11162342.
DOI: 10.1016/j.str.2024.02.017.
Engineering and Expression Strategies for Optimization of L-Asparaginase Development and Production.
Shishparenok A, Gladilina Y, Zhdanov D
Int J Mol Sci. 2023; 24(20).
PMID: 37894901
PMC: 10607044.
DOI: 10.3390/ijms242015220.
A Suite of Designed Protein Cages Using Machine Learning Algorithms and Protein Fragment-Based Protocols.
Meador K, Castells-Graells R, Aguirre R, Sawaya M, Arbing M, Sherman T
bioRxiv. 2023; .
PMID: 37873110
PMC: 10592684.
DOI: 10.1101/2023.10.09.561468.
Potent and selective eradication of tumor cells by an EpCAM-targeted Ras-degrading enzyme.
Palacio-Castaneda V, van de Crommert B, Verploegen E, Overeem M, van Oostrum J, Verdurmen W
Mol Ther Oncolytics. 2023; 30:16-26.
PMID: 37485031
PMC: 10362089.
DOI: 10.1016/j.omto.2023.06.002.
TransMHCII: a novel MHC-II binding prediction model built using a protein language model and an image classifier.
Yu X, Negron C, Huang L, Veldman G
Antib Ther. 2023; 6(2):137-146.
PMID: 37342671
PMC: 10278228.
DOI: 10.1093/abt/tbad011.
A versatile Halo- and SNAP-tagged BMP/TGFβ receptor library for quantification of cell surface ligand binding.
Jatzlau J, Burdzinski W, Trumpp M, Obendorf L, Rossmann K, Ravn K
Commun Biol. 2023; 6(1):34.
PMID: 36635368
PMC: 9837045.
DOI: 10.1038/s42003-022-04388-4.
Optimizing Antibody-Antigen Binding Affinities with the ADAPT Platform.
Sulea T, Deprez C, Corbeil C, Purisima E
Methods Mol Biol. 2022; 2552:361-374.
PMID: 36346603
DOI: 10.1007/978-1-0716-2609-2_20.
PITHA: A Webtool to Predict Immunogenicity for Humanized and Fully Human Therapeutic Antibodies.
Liang S, Zhang C
Methods Mol Biol. 2022; 2552:143-150.
PMID: 36346590
DOI: 10.1007/978-1-0716-2609-2_7.
CD4+ T-Cell Epitope Prediction by Combined Analysis of Antigen Conformational Flexibility and Peptide-MHCII Binding Affinity.
Charles T, Moss D, Bhat P, Moore P, Kummer N, Bhattacharya A
Biochemistry. 2022; 61(15):1585-1599.
PMID: 35834502
PMC: 9352311.
DOI: 10.1021/acs.biochem.2c00237.
Multiple-Allele MHC Class II Epitope Engineering by a Molecular Dynamics-Based Evolution Protocol.
Ochoa R, Lunardelli V, Santoro Rosa D, Laio A, Cossio P
Front Immunol. 2022; 13:862851.
PMID: 35572587
PMC: 9094701.
DOI: 10.3389/fimmu.2022.862851.
Targeted intracellular delivery of Cas13 and Cas9 nucleases using bacterial toxin-based platforms.
Tian S, Liu Y, Appleton E, Wang H, Church G, Dong M
Cell Rep. 2022; 38(10):110476.
PMID: 35263584
PMC: 8958846.
DOI: 10.1016/j.celrep.2022.110476.
Structure-Based Modeling of SARS-CoV-2 Peptide/HLA-A02 Antigens.
Nerli S, Sgourakis N
Front Med Technol. 2022; 2:553478.
PMID: 35047875
PMC: 8757863.
DOI: 10.3389/fmedt.2020.553478.
Using a Prime-Boost Vaccination Strategy That Proved Effective for High Resolution Epitope Mapping to Characterize the Elusive Immunogenicity of Survivin.
Mould R, van Vloten J, AuYeung A, Walsh S, de Jong J, Susta L
Cancers (Basel). 2021; 13(24).
PMID: 34944889
PMC: 8699342.
DOI: 10.3390/cancers13246270.