» Articles » PMID: 24576056

Functional Divergence Between the Two P1-P2 Stalk Dimers on the Ribosome in Their Interaction with Ricin A Chain

Overview
Journal Biochem J
Specialty Biochemistry
Date 2014 Mar 1
PMID 24576056
Citations 6
Authors
Affiliations
Soon will be listed here.
Abstract

The eukaryotic stalk, which is responsible for the recruitment of translation factors, is a pentamer containing two P1-P2 dimers with unclear modes of action. In Saccharomyces cerevisiae, P1/P2 proteins (individual P1 and P2 proteins) are organized into two distinct dimers, P1A-P2B and P1B-P2A. To investigate the functional contribution of each dimer on the ribosome, RTA (ricin A chain), which binds to the stalk to depurinate the SRL (sarcin/ricin loop), was used as a molecular probe in yeast mutants in which the binding site for one or the other dimer on P0 was deleted. Ribosome depurination and toxicity of RTA were greatly reduced in mutants containing only P1A-P2B on the ribosome, whereas those with only P1B-P2A were reduced less in depurination and were unaffected in toxicity. Ribosomes bearing P1B-P2A were depurinated by RTA at a similar level as wild-type, but ribosomes bearing P1A-P2B were depurinated at a much lower level in vitro. The latter ribosomes showed the lowest association and almost no dissociation with RTA by surface plasmon resonance. These results indicate that the P1B-P2A dimer is more critical for facilitating the access of RTA to the SRL, providing the first in vivo evidence for functional divergence between the two stalk dimers on the ribosome.

Citing Articles

Small Molecule Inhibitors Targeting the Interaction of Ricin Toxin A Subunit with Ribosomes.

Li X, Harijan R, Kahn J, Schramm V, Tumer N ACS Infect Dis. 2020; 6(7):1894-1905.

PMID: 32428396 PMC: 7678679. DOI: 10.1021/acsinfecdis.0c00127.


Intracellular Transport and Cytotoxicity of the Protein Toxin Ricin.

Sowa-Rogozinska N, Sominka H, Nowakowska-Golacka J, Sandvig K, Slominska-Wojewodzka M Toxins (Basel). 2019; 11(6).

PMID: 31216687 PMC: 6628406. DOI: 10.3390/toxins11060350.


How Ricin Damages the Ribosome.

Grela P, Szajwaj M, Horbowicz-Drozdzal P, Tchorzewski M Toxins (Basel). 2019; 11(5).

PMID: 31035546 PMC: 6562825. DOI: 10.3390/toxins11050241.


Functional Assays for Measuring the Catalytic Activity of Ribosome Inactivating Proteins.

Zhou Y, Li X, Kahn J, Tumer N Toxins (Basel). 2018; 10(6).

PMID: 29899209 PMC: 6024586. DOI: 10.3390/toxins10060240.


Human ribosomal P1-P2 heterodimer represents an optimal docking site for ricin A chain with a prominent role for P1 C-terminus.

Grela P, Li X, Horbowicz P, Dzwierzynska M, Tchorzewski M, Tumer N Sci Rep. 2017; 7(1):5608.

PMID: 28717148 PMC: 5514047. DOI: 10.1038/s41598-017-05675-5.


References
1.
Traut R, Dey D, Bochkariov D, Oleinikov A, Jokhadze G, Hamman B . Location and domain structure of Escherichia coli ribosomal protein L7/L12: site specific cysteine crosslinking and attachment of fluorescent probes. Biochem Cell Biol. 1995; 73(11-12):949-58. DOI: 10.1139/o95-102. View

2.
Gonzalo P, Reboud J . The puzzling lateral flexible stalk of the ribosome. Biol Cell. 2003; 95(3-4):179-93. DOI: 10.1016/s0248-4900(03)00034-0. View

3.
Naganuma T, Nomura N, Yao M, Mochizuki M, Uchiumi T, Tanaka I . Structural basis for translation factor recruitment to the eukaryotic/archaeal ribosomes. J Biol Chem. 2009; 285(7):4747-56. PMC: 2836080. DOI: 10.1074/jbc.M109.068098. View

4.
Helgstrand M, Mandava C, Mulder F, Liljas A, Sanyal S, Akke M . The ribosomal stalk binds to translation factors IF2, EF-Tu, EF-G and RF3 via a conserved region of the L12 C-terminal domain. J Mol Biol. 2006; 365(2):468-79. DOI: 10.1016/j.jmb.2006.10.025. View

5.
Maki Y, Hashimoto T, Zhou M, Naganuma T, Ohta J, Nomura T . Three binding sites for stalk protein dimers are generally present in ribosomes from archaeal organism. J Biol Chem. 2007; 282(45):32827-33. DOI: 10.1074/jbc.M705412200. View