Proceedings of the 2013 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference

Overview

Journal BMC Bioinformatics

Publisher Biomed Central

Specialty Biology

Date 2013 Nov 26

PMID 24267415

Authors

Jonathan D Wren

Mikhail G Dozmorov

Dennis Burian

Rakesh Kaundal

Andy Perkins

Ed Perkins

Doris M Kupfer

Gordon K Springer

Affiliations

Soon will be listed here.

Abstract

The tenth annual conference of the MidSouth Computational Biology and Bioinformatics Society (MCBIOS 2013), "The 10th Anniversary in a Decade of Change: Discovery in a Sea of Data", took place at the Stoney Creek Inn & Conference Center in Columbia, Missouri on April 5-6, 2013. This year's Conference Chairs were Gordon Springer and Chi-Ren Shyu from the University of Missouri and Edward Perkins from the US Army Corps of Engineers Engineering Research and Development Center, who is also the current MCBIOS President (2012-3). There were 151 registrants and a total of 111 abstracts (51 oral presentations and 60 poster session abstracts).

References

Giles C, Girija-Devi R, Dozmorov M, Wren J . mirCoX: a database of miRNA-mRNA expression correlations derived from RNA-seq meta-analysis. BMC Bioinformatics. 2013; 14 Suppl 14:S17. PMC: 3850996. DOI: 10.1186/1471-2105-14-S14-S17. View

Rao R, Xu D, Thelen J, Miernyk J . Circles within circles: crosstalk between protein Ser/Thr/Tyr-phosphorylation and Met oxidation. BMC Bioinformatics. 2013; 14 Suppl 14:S14. PMC: 3851202. DOI: 10.1186/1471-2105-14-S14-S14. View

Shen J, Zhang W, Fang H, Perkins R, Tong W, Hong H . Homology modeling, molecular docking, and molecular dynamics simulations elucidated α-fetoprotein binding modes. BMC Bioinformatics. 2013; 14 Suppl 14:S6. PMC: 3851483. DOI: 10.1186/1471-2105-14-S14-S6. View

Ahmed F, Kaundal R, Raghava G . PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. BMC Bioinformatics. 2013; 14 Suppl 14:S9. PMC: 3851333. DOI: 10.1186/1471-2105-14-S14-S9. View

Wren J, Dozmorov M, Burian D, Kaundal R, Bridges S, Kupfer D . Proceedings of the 2012 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. Introduction. BMC Bioinformatics. 2012; 13 Suppl 15:S1. PMC: 3439718. DOI: 10.1186/1471-2105-13-S15-S1. View

Yang J, Li J, Grunewald S, Wan X . BinAligner: a heuristic method to align biological networks. BMC Bioinformatics. 2013; 14 Suppl 14:S8. PMC: 3851320. DOI: 10.1186/1471-2105-14-S14-S8. View

Yang Y, Maxwell A, Zhang X, Wang N, Perkins E, Zhang C . Differential reconstructed gene interaction networks for deriving toxicity threshold in chemical risk assessment. BMC Bioinformatics. 2013; 14 Suppl 14:S3. PMC: 3851258. DOI: 10.1186/1471-2105-14-S14-S3. View

Eickholt J, Cheng J . A study and benchmark of DNcon: a method for protein residue-residue contact prediction using deep networks. BMC Bioinformatics. 2013; 14 Suppl 14:S12. PMC: 3850995. DOI: 10.1186/1471-2105-14-S14-S12. View

Dozmorov M, Giles C, Koelsch K, Wren J . Systematic classification of non-coding RNAs by epigenomic similarity. BMC Bioinformatics. 2013; 14 Suppl 14:S2. PMC: 3851203. DOI: 10.1186/1471-2105-14-S14-S2. View

10.

Zhao Z, Fu G, Liu S, Elokely K, Doerksen R, Chen Y . Drug activity prediction using multiple-instance learning via joint instance and feature selection. BMC Bioinformatics. 2013; 14 Suppl 14:S16. PMC: 3850986. DOI: 10.1186/1471-2105-14-S14-S16. View

11.

Kaundal R, Sahu S, Verma R, Weirick T . Identification and characterization of plastid-type proteins from sequence-attributed features using machine learning. BMC Bioinformatics. 2013; 14 Suppl 14:S7. PMC: 3851450. DOI: 10.1186/1471-2105-14-S14-S7. View

12.

Chavan S, Bauer M, Peterson E, Heuck C, Johann Jr D . Towards the integration, annotation and association of historical microarray experiments with RNA-seq. BMC Bioinformatics. 2013; 14 Suppl 14:S4. PMC: 3851429. DOI: 10.1186/1471-2105-14-S14-S4. View

13.

Zhang F, Drabier R . SASD: the Synthetic Alternative Splicing Database for identifying novel isoform from proteomics. BMC Bioinformatics. 2013; 14 Suppl 14:S13. PMC: 3850988. DOI: 10.1186/1471-2105-14-S14-S13. View

14.

Hennessey J, Ge S . A cross disciplinary study of link decay and the effectiveness of mitigation techniques. BMC Bioinformatics. 2013; 14 Suppl 14:S5. PMC: 3851533. DOI: 10.1186/1471-2105-14-S14-S5. View

15.

Bisgin H, Chen M, Wang Y, Kelly R, Fang H, Xu X . A systems approach for analysis of high content screening assay data with topic modeling. BMC Bioinformatics. 2013; 14 Suppl 14:S11. PMC: 3851019. DOI: 10.1186/1471-2105-14-S14-S11. View

16.

Zou W, Tang H, Zhao W, Meehan J, Foley S, Lin W . Data mining tools for Salmonella characterization: application to gel-based fingerprinting analysis. BMC Bioinformatics. 2013; 14 Suppl 14:S15. PMC: 3851133. DOI: 10.1186/1471-2105-14-S14-S15. View

17.

Singh R, Yang H, Dalziel B, Asarnow D, Murad W, Foote D . Towards human-computer synergetic analysis of large-scale biological data. BMC Bioinformatics. 2013; 14 Suppl 14:S10. PMC: 3851181. DOI: 10.1186/1471-2105-14-S14-S10. View