» Articles » PMID: 24169672

Infraspecific Differentiation of Garlic (Allium Sativum L.) by Isozyme and RAPD Markers

Overview
Publisher Springer
Specialty Genetics
Date 2013 Oct 31
PMID 24169672
Citations 18
Authors
Affiliations
Soon will be listed here.
Abstract

Garlic (Allium sativum L.) is a sterile species of considerable variability with respect to morphological and physiological features. The crop presumably originated in West to Middle Asia from its progenitor A. longicuspis Regel and was transported from there to the Mediterranean and other areas of cultivation. In order to clarify older classification schemes, often based on small or biased collections, we used isozyme and RAPD markers to analyze and structure a collection of 300 accessions, many of which were gathered in Middle Asia close to the assumed center of origin. All of the accessions were first investigated with isozymes, and 48 were selected for a RAPD analysis. The resulting molecular markers were used to construct neighbor-joining dendrograms to group the accessions and to indicate the genetic distances between them. Based on the dendrograms and in conjunction with some morphological features, we propose an infraspecific classification of garlic with four major groups. In agreement with the results of other workers, A. longicuspis lies within the range of the species A. sativum. Numerous forms with varying degrees of domestication are part of our longicuspis group, from which presumably the more derived cultivar groups originated. The origin and spreading of the crop are discussed with respect to the geographical distribution and the genetic distances of the accessions.

Citing Articles

Identification and functional characterization of AsWRKY9, a WRKY transcription factor modulating alliin biosynthesis in garlic (Allium sativum L.).

Wu J, Li M, Wang W, Su Y, Li J, Gong J BMC Biol. 2025; 23(1):14.

PMID: 39806468 PMC: 11731438. DOI: 10.1186/s12915-025-02116-y.


Integrated genome-wide association and transcriptomic studies reveal genetic architecture of bulb storability of plentiful garlic germplasm resources.

Zhu Y, Jia H, Song J, Zhang T, Zhang X, Yang W Hortic Res. 2024; 11(12):uhae260.

PMID: 39664692 PMC: 11630311. DOI: 10.1093/hr/uhae260.


Assessment of genetic diversity and population structure analysis in Himalayan garlic genotypes from Sikkim using SSR markers.

Sharma L, Kumar R, Tare K, Lamichaney S Mol Biol Rep. 2024; 52(1):38.

PMID: 39644441 DOI: 10.1007/s11033-024-10142-2.


Revealing the Genetic Diversity and Population Structure of Garlic Resource Cultivars and Screening of Core Cultivars Based on Specific Length Amplified Fragment Sequencing (SLAF-Seq).

Yang J, Sun M, Ren X, Li P, Hui J, Zhang J Genes (Basel). 2024; 15(9).

PMID: 39336726 PMC: 11431738. DOI: 10.3390/genes15091135.


Deprivation of Sexual Reproduction during Garlic Domestication and Crop Evolution.

Shemesh-Mayer E, Faigenboim A, Sherman A, Gao S, Zeng Z, Liu T Int J Mol Sci. 2023; 24(23).

PMID: 38069099 PMC: 10706073. DOI: 10.3390/ijms242316777.


References
1.
Soliman K, Jorgensen R, Allard R . Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci U S A. 1984; 81(24):8014-8. PMC: 392284. DOI: 10.1073/pnas.81.24.8014. View

2.
Wilkie S, Isaac P, Slater R . Random amplified polymorphic DNA (RAPD) markers for genetic analysis inAllium. Theor Appl Genet. 2013; 86(4):497-504. DOI: 10.1007/BF00838566. View

3.
Saitou N, Nei M . The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987; 4(4):406-25. DOI: 10.1093/oxfordjournals.molbev.a040454. View

4.
G Williams J, Kubelik A, Livak K, Rafalski J, Tingey S . DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 1990; 18(22):6531-5. PMC: 332606. DOI: 10.1093/nar/18.22.6531. View

5.
Raelson J, Grant W . An isoenzyme study in the genus Lotus (Fabaceae). Experimental protocols and genetic basis of electrophoretic phenotype. Theor Appl Genet. 2013; 77(4):595-607. DOI: 10.1007/BF00274286. View