» Articles » PMID: 24166031

Genome Dynamics During Experimental Evolution

Overview
Journal Nat Rev Genet
Specialty Genetics
Date 2013 Oct 30
PMID 24166031
Citations 288
Authors
Affiliations
Soon will be listed here.
Abstract

Evolutionary changes in organismal traits may occur either gradually or suddenly. However, until recently, there has been little direct information about how phenotypic changes are related to the rate and the nature of the underlying genotypic changes. Technological advances that facilitate whole-genome and whole-population sequencing, coupled with experiments that 'watch' evolution in action, have brought new precision to and insights into studies of mutation rates and genome evolution. In this Review, we discuss the evolutionary forces and ecological processes that govern genome dynamics in various laboratory systems in the context of relevant population genetic theory, and we relate these findings to evolution in natural populations.

Citing Articles

Low Mutation Rate and Atypical Mutation Spectrum in Prasinoderma coloniale: Insights From an Early Diverging Green Lineage.

Mettrop L, Lipzen A, Vandecasteele C, Eche C, Labecot A, Barry K Genome Biol Evol. 2025; 17(3).

PMID: 40048667 PMC: 11884799. DOI: 10.1093/gbe/evaf026.


Geographical patterns of intraspecific genetic diversity reflect the adaptive potential of the coral Pocillopora damicornis species complex.

Carr M, Kratochwill C, Daly-Engel T, Crombie T, van Woesik R PLoS One. 2025; 20(1):e0316380.

PMID: 39841675 PMC: 11753671. DOI: 10.1371/journal.pone.0316380.


Inference of the Demographic Histories and Selective Effects of Human Gut Commensal Microbiota Over the Course of Human History.

Mah J, Lohmueller K, Garud N, Garud N Mol Biol Evol. 2025; 42(2).

PMID: 39838923 PMC: 11824422. DOI: 10.1093/molbev/msaf010.


Asynchronous abundance fluctuations can drive giant genotype frequency fluctuations.

Ascensao J, Lok K, Hallatschek O Nat Ecol Evol. 2024; 9(1):166-179.

PMID: 39578596 DOI: 10.1038/s41559-024-02578-3.


Direct and indirect selection in a proofreading polymerase.

Husain K, Sachdeva V, Ravasio R, Peruzzo M, Liu W, Good B bioRxiv. 2024; .

PMID: 39464107 PMC: 11507774. DOI: 10.1101/2024.10.14.618309.


References
1.
R Denver D, Dolan P, Wilhelm L, Sung W, Lucas-Lledo J, Howe D . A genome-wide view of Caenorhabditis elegans base-substitution mutation processes. Proc Natl Acad Sci U S A. 2009; 106(38):16310-4. PMC: 2752564. DOI: 10.1073/pnas.0904895106. View

2.
Drake J . Spontaneous mutation. Annu Rev Genet. 1991; 25:125-46. DOI: 10.1146/annurev.ge.25.120191.001013. View

3.
Bull J, Badgett M, Wichman H, Huelsenbeck J, Hillis D, Gulati A . Exceptional convergent evolution in a virus. Genetics. 1997; 147(4):1497-507. PMC: 1208326. DOI: 10.1093/genetics/147.4.1497. View

4.
Barrick J, Yu D, Yoon S, Jeong H, Oh T, Schneider D . Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature. 2009; 461(7268):1243-7. DOI: 10.1038/nature08480. View

5.
Woods R, Barrick J, Cooper T, Shrestha U, Kauth M, Lenski R . Second-order selection for evolvability in a large Escherichia coli population. Science. 2011; 331(6023):1433-6. PMC: 3176658. DOI: 10.1126/science.1198914. View