Briones-Andrade J, Ramirez-Santiago G, Romero-Arias J
R Soc Open Sci. 2024; 11(10):240702.
PMID: 39493299
PMC: 11528534.
DOI: 10.1098/rsos.240702.
Chen S, Sun Y, Zhang F, Luo C
Biophys J. 2024; 123(23):4030-4041.
PMID: 39478343
PMC: 11628857.
DOI: 10.1016/j.bpj.2024.10.015.
Sun Y, Zhang F, Ouyang Q, Luo C
iScience. 2024; 27(3):109142.
PMID: 38384832
PMC: 10879701.
DOI: 10.1016/j.isci.2024.109142.
Karamched B, Miles C
J R Soc Interface. 2023; 20(203):20230059.
PMID: 37376870
PMC: 10300509.
DOI: 10.1098/rsif.2023.0059.
Pigani E, Sgarbossa D, Suweis S, Maritan A, Azaele S
Proc Natl Acad Sci U S A. 2022; 119(45):e2211449119.
PMID: 36322754
PMC: 9659405.
DOI: 10.1073/pnas.2211449119.
Medium Entropy Reduction and Instability in Stochastic Systems with Distributed Delay.
Loos S, Hermann S, Klapp S
Entropy (Basel). 2021; 23(6).
PMID: 34073091
PMC: 8229647.
DOI: 10.3390/e23060696.
Effects of noise and time delay on E2F's expression level in a bistable Rb-E2F gene's regulatory network.
Kirunda J, Yang L, Lu L, Jia Y
IET Syst Biol. 2021; 15(4):111-125.
PMID: 33881232
PMC: 8675803.
DOI: 10.1049/syb2.12017.
Nonlinear delay differential equations and their application to modeling biological network motifs.
Glass D, Jin X, Riedel-Kruse I
Nat Commun. 2021; 12(1):1788.
PMID: 33741909
PMC: 7979834.
DOI: 10.1038/s41467-021-21700-8.
Delay-induced uncertainty for a paradigmatic glucose-insulin model.
Karamched B, Hripcsak G, Albers D, Ott W
Chaos. 2021; 31(2):023142.
PMID: 33653035
PMC: 7910007.
DOI: 10.1063/5.0027682.
Astroglial Calcium Signaling Encodes Sleep Need in Drosophila.
Blum I, Keles M, Baz E, Han E, Park K, Luu S
Curr Biol. 2020; 31(1):150-162.e7.
PMID: 33186550
PMC: 8442851.
DOI: 10.1016/j.cub.2020.10.012.
Mixture distributions in a stochastic gene expression model with delayed feedback: a WKB approximation approach.
Bokes P, Borri A, Palumbo P, Singh A
J Math Biol. 2020; 81(1):343-367.
PMID: 32583030
PMC: 7363733.
DOI: 10.1007/s00285-020-01512-y.
Circuit-Host Coupling Induces Multifaceted Behavioral Modulations of a Gene Switch.
Blanchard A, Liao C, Lu T
Biophys J. 2018; 114(3):737-746.
PMID: 29414718
PMC: 5985027.
DOI: 10.1016/j.bpj.2017.12.010.
The effects of time-varying temperature on delays in genetic networks.
Gomez M, Murray R, Bennett M
SIAM J Appl Dyn Syst. 2017; 15(3):1734-1752.
PMID: 29081723
PMC: 5656297.
DOI: 10.1137/15M1040979.
The Timing of Transcriptional Regulation in Synthetic Gene Circuits.
Cheng Y, Hirning A, Josic K, Bennett M
ACS Synth Biol. 2017; 6(11):1996-2002.
PMID: 28841307
PMC: 5996764.
DOI: 10.1021/acssynbio.7b00118.
Effects of cell cycle noise on excitable gene circuits.
Veliz-Cuba A, Gupta C, Bennett M, Josic K, Ott W
Phys Biol. 2016; 13(6):066007.
PMID: 27902489
PMC: 5498228.
DOI: 10.1088/1478-3975/13/6/066007.
Periodic, Quasi-periodic and Chaotic Dynamics in Simple Gene Elements with Time Delays.
Suzuki Y, Lu M, Ben-Jacob E, Onuchic J
Sci Rep. 2016; 6:21037.
PMID: 26876008
PMC: 4753448.
DOI: 10.1038/srep21037.
Multi-scale approach for simulating time-delay biochemical reaction systems.
Niu Y, Burrage K, Zhang C
IET Syst Biol. 2015; 9(1):31-8.
PMID: 25569862
PMC: 8687155.
DOI: 10.1049/iet-syb.2013.0023.
Modeling putative therapeutic implications of exosome exchange between tumor and immune cells.
Lu M, Huang B, Hanash S, Onuchic J, Ben-Jacob E
Proc Natl Acad Sci U S A. 2014; 111(40):E4165-74.
PMID: 25246552
PMC: 4210007.
DOI: 10.1073/pnas.1416745111.
Modeling delay in genetic networks: from delay birth-death processes to delay stochastic differential equations.
Gupta C, Lopez J, Azencott R, Bennett M, Josic K, Ott W
J Chem Phys. 2014; 140(20):204108.
PMID: 24880267
PMC: 4039735.
DOI: 10.1063/1.4878662.