Proteomics of Rice Seed Germination

Overview

Journal Front Plant Sci

Date 2013 Jul 13

PMID 23847647

Citations 53

Authors

Dongli He

Pingfang Yang

Affiliations

Soon will be listed here.

Abstract

Seed is a condensed form of plant. Under suitable environmental conditions, it can resume the metabolic activity from physiological quiescent status, and mobilize the reserves, biosynthesize new proteins, regenerate organelles, and cell membrane, eventually protrude the radicle and enter into seedling establishment. So far, how these activities are regulated in a coordinated and sequential manner is largely unknown. With the availability of more and more genome sequence information and the development of mass spectrometry (MS) technology, proteomics has been widely applied in analyzing the mechanisms of different biological processes, and proved to be very powerful. Regulation of rice seed germination is critical for rice cultivation. In recent years, a lot of proteomic studies have been conducted in exploring the gene expression regulation, reserves mobilization and metabolisms reactivation, which brings us new insights on the mechanisms of metabolism regulation during this process. Nevertheless, it also invokes a lot of questions. In this mini-review, we summarized the progress in the proteomic studies of rice seed germination. The current challenges and future perspectives were also discussed, which might be helpful for the following studies.

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References

Penfield S, Josse E, Kannangara R, Gilday A, Halliday K, Graham I . Cold and light control seed germination through the bHLH transcription factor SPATULA. Curr Biol. 2005; 15(22):1998-2006. DOI: 10.1016/j.cub.2005.11.010. View

Agrawal G, Jwa N, Rakwal R . Rice proteomics: ending phase I and the beginning of phase II. Proteomics. 2009; 9(4):935-63. DOI: 10.1002/pmic.200800594. View

Lopez-Molina L, Mongrand S, McLachlin D, Chait B, Chua N . ABI5 acts downstream of ABI3 to execute an ABA-dependent growth arrest during germination. Plant J. 2002; 32(3):317-28. DOI: 10.1046/j.1365-313x.2002.01430.x. View

Yu J, Hu S, Wang J, Wong G, Li S, Liu B . A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science. 2002; 296(5565):79-92. DOI: 10.1126/science.1068037. View

Kim S, Kim S, Kang Y, Wang Y, Kim J, Yi N . Proteomics analysis of rice lesion mimic mutant (spl1) reveals tightly localized probenazole-induced protein (PBZ1) in cells undergoing programmed cell death. J Proteome Res. 2008; 7(4):1750-60. DOI: 10.1021/pr700878t. View

Zischka H, Braun R, Marantidis E, Buringer D, Bornhovd C, Hauck S . Differential analysis of Saccharomyces cerevisiae mitochondria by free flow electrophoresis. Mol Cell Proteomics. 2006; 5(11):2185-200. DOI: 10.1074/mcp.T600018-MCP200. View

Daszkowska-Golec A . Arabidopsis seed germination under abiotic stress as a concert of action of phytohormones. OMICS. 2011; 15(11):763-74. DOI: 10.1089/omi.2011.0082. View

Lee K, Chen P, Lu C, Chen S, Ho T, Yu S . Coordinated responses to oxygen and sugar deficiency allow rice seedlings to tolerate flooding. Sci Signal. 2009; 2(91):ra61. DOI: 10.1126/scisignal.2000333. View

Miura K, Lin Y, Yano M, Nagamine T . Mapping quantitative trait loci controlling seed longevity in rice ( Oryza sativa L.). Theor Appl Genet. 2003; 104(6-7):981-986. DOI: 10.1007/s00122-002-0872-x. View

10.

Perata P, Pozueta-Romero J, Akazawa T, Yamaguchi J . Effect of anoxia on starch breakdown in rice and wheat seeds. Planta. 2013; 188(4):611-8. DOI: 10.1007/BF00197056. View

11.

Howell K, Millar A, Whelan J . Ordered assembly of mitochondria during rice germination begins with pro-mitochondrial structures rich in components of the protein import apparatus. Plant Mol Biol. 2006; 60(2):201-23. DOI: 10.1007/s11103-005-3688-7. View

12.

Rakwal R, Agrawal G . Rice proteomics: current status and future perspectives. Electrophoresis. 2003; 24(19-20):3378-89. DOI: 10.1002/elps.200305586. View

13.

Agrawal G, Rakwal R . Rice proteomics: a cornerstone for cereal food crop proteomes. Mass Spectrom Rev. 2005; 25(1):1-53. DOI: 10.1002/mas.20056. View

14.

Matsukura C, Saitoh T, Hirose T, Ohsugi R, Perata P, Yamaguchi J . Sugar uptake and transport in rice embryo. Expression of companion cell-specific sucrose transporter (OsSUT1) induced by sugar and light. Plant Physiol. 2000; 124(1):85-93. PMC: 59124. DOI: 10.1104/pp.124.1.85. View

15.

Emami K, Morris N, Cockell S, Golebiowska G, Shu Q, Gatehouse A . Changes in protein expression profiles between a low phytic acid rice ( Oryza sativa L. Ssp. japonica) line and its parental line: a proteomic and bioinformatic approach. J Agric Food Chem. 2010; 58(11):6912-22. DOI: 10.1021/jf904082b. View

16.

Shingaki-Wells R, Huang S, Taylor N, Carroll A, Zhou W, Millar A . Differential molecular responses of rice and wheat coleoptiles to anoxia reveal novel metabolic adaptations in amino acid metabolism for tissue tolerance. Plant Physiol. 2011; 156(4):1706-24. PMC: 3149938. DOI: 10.1104/pp.111.175570. View

17.

Lounifi I, Arc E, Molassiotis A, Job D, Rajjou L, Tanou G . Interplay between protein carbonylation and nitrosylation in plants. Proteomics. 2012; 13(3-4):568-78. DOI: 10.1002/pmic.201200304. View

18.

Job C, Rajjou L, Lovigny Y, Belghazi M, Job D . Patterns of protein oxidation in Arabidopsis seeds and during germination. Plant Physiol. 2005; 138(2):790-802. PMC: 1150397. DOI: 10.1104/pp.105.062778. View

19.

Ytterberg A, Jensen O . Modification-specific proteomics in plant biology. J Proteomics. 2010; 73(11):2249-66. DOI: 10.1016/j.jprot.2010.06.002. View

20.

Komatsu S, Abbasi F, Kobori E, Fujisawa Y, Kato H, Iwasaki Y . Proteomic analysis of rice embryo: an approach for investigating Galpha protein-regulated proteins. Proteomics. 2005; 5(15):3932-41. DOI: 10.1002/pmic.200401237. View