Alishewanella Solinquinati Sp. Nov., Isolated from Soil Contaminated with Textile Dyes

Overview

Journal Curr Microbiol

Specialty Microbiology

Date 2013 May 22

PMID 23689942

Citations 6

Authors

Yogesh M Kolekar

Shrikant P Pawar

Sunil S Adav

Liu-Qiang Zheng

Wen-Jun Li

Yogesh S Shouche

Syed G Dastager

Kisan M Kodam

Affiliations

Soon will be listed here.

Abstract

A novel Gram-negative, motile, rod-shaped, facultative anaerobic bacterial strain, KMK6(T), was isolated from soil contaminated with textile dyes from an industrial estate located at Ichalkaranji, Maharashtra, India, and its taxonomical position was established by using a polyphasic approach. The major cellular fatty acids included C17:1ω8c, summed feature 3 (C16:1ω7c and/or iso-C15:0 2-OH), C17:0, C16:0, and C18:1ω7c. The DNA G+C content of strain KMK6(T) was 48.8 mol %. 16S rRNA gene sequence analysis confirmed its placement in the genus Alishewanella, and exhibited sequence similarity levels of below 97 % to the type strains of validly published Alishewanella species. On the basis of genotypic and phenotypic evidence, strains KMK6(T) is considered to be a novel species of the genus Alishewanella, for which we propose that strain KMK6(T) (=NCIM 5295(T) =BCRC 17848(T)) is assigned to a novel species, Alishewanella solinquinati sp. nov.

Citing Articles

Plant growth-promoting characteristics of halotolerant endophytic bacteria isolated from Sporobolus specatus (Vahr) Kunth and Cyperus laevigatus L. of Ethiopian rift valley lakes.

Enquahone S, van Marle G, Simachew A Arch Microbiol. 2022; 204(7):403.

PMID: 35723754 DOI: 10.1007/s00203-022-03021-6.

Draft Whole-Genome Sequence of the Alkaliphilic Alishewanella aestuarii Strain HH-ZS, Isolated from Historical Lime Kiln Waste-Contaminated Soil.

Salah Z, Rout S, Humphreys P Genome Announc. 2016; 4(6).

PMID: 28034857 PMC: 5201056. DOI: 10.1128/genomeA.01447-16.

Data on optimized production and characterization of alkaline proteases from newly isolated alkaliphiles from Lonar soda lake, India.

Rathod M, Pathak A Data Brief. 2016; 8:863-6.

PMID: 27508233 PMC: 4957540. DOI: 10.1016/j.dib.2016.06.044.

Draft genomic sequence of a chromate- and sulfate-reducing Alishewanella strain with the ability to bioremediate Cr and Cd contamination.

Xia X, Li J, Liao S, Zhou G, Wang H, Li L Stand Genomic Sci. 2016; 11:48.

PMID: 27499827 PMC: 4974768. DOI: 10.1186/s40793-016-0169-3.

Changes in the water quality and bacterial community composition of an alkaline and saline oxbow lake used for temporary reservoir of geothermal waters.

Borsodi A, Sziranyi B, Krett G, Marialigeti K, Janurik E, Pekar F Environ Sci Pollut Res Int. 2016; 23(17):17676-88.

PMID: 27240829 DOI: 10.1007/s11356-016-6923-7.

References

Kimura M . A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 1980; 16(2):111-20. DOI: 10.1007/BF01731581. View

MARMUR J, Doty P . Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol. 1962; 5:109-18. DOI: 10.1016/s0022-2836(62)80066-7. View

Tarhriz V, Nematzadeh G, Zununi Vahed S, Hejazi M, Hejazi M . Alishewanella tabrizica sp. nov., isolated from Qurugol Lake. Int J Syst Evol Microbiol. 2011; 62(Pt 8):1986-1991. DOI: 10.1099/ijs.0.031567-0. View

Saitou N, Nei M . The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987; 4(4):406-25. DOI: 10.1093/oxfordjournals.molbev.a040454. View

Tamura K, Dudley J, Nei M, Kumar S . MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol. 2007; 24(8):1596-9. DOI: 10.1093/molbev/msm092. View

Li W, Xu P, Schumann P, Zhang Y, Pukall R, Xu L . Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia. Int J Syst Evol Microbiol. 2007; 57(Pt 7):1424-1428. DOI: 10.1099/ijs.0.64749-0. View

Kim M, Roh S, Nam Y, Chang H, Kim K, Jung M . Alishewanella jeotgali sp. nov., isolated from traditional fermented food, and emended description of the genus Alishewanella. Int J Syst Evol Microbiol. 2009; 59(Pt 9):2313-6. DOI: 10.1099/ijs.0.007260-0. View

Thompson J, Gibson T, Plewniak F, Jeanmougin F, Higgins D . The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1998; 25(24):4876-82. PMC: 147148. DOI: 10.1093/nar/25.24.4876. View

Vogel B, Venkateswaran K, Christensen H, Falsen E, Christiansen G, Gram L . Polyphasic taxonomic approach in the description of Alishewanella fetalis gen. nov., sp. nov., isolated from a human foetus. Int J Syst Evol Microbiol. 2000; 50 Pt 3:1133-1142. DOI: 10.1099/00207713-50-3-1133. View

10.

Huss V, Festl H, Schleifer K . Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol. 2012; 4(2):184-92. DOI: 10.1016/S0723-2020(83)80048-4. View

11.

De Ley J, Cattoir H, Reynaerts A . The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem. 1970; 12(1):133-42. DOI: 10.1111/j.1432-1033.1970.tb00830.x. View

12.

Mogensen G, Kjeldsen K, Ingvorsen K . Desulfovibrio aerotolerans sp. nov., an oxygen tolerant sulphate-reducing bacterium isolated from activated sludge. Anaerobe. 2006; 11(6):339-49. DOI: 10.1016/j.anaerobe.2005.04.002. View

13.

Roh S, Nam Y, Chang H, Kim K, Kim M, Oh H . Alishewanella aestuarii sp. nov., isolated from tidal flat sediment, and emended description of the genus Alishewanella. Int J Syst Evol Microbiol. 2009; 59(Pt 2):421-4. DOI: 10.1099/ijs.0.65643-0. View

14.

Meier A, Kirschner P, Schroder K, Wolters J, Kroppenstedt R, Bottger E . Mycobacterium intermedium sp. nov. Int J Syst Bacteriol. 1993; 43(2):204-9. DOI: 10.1099/00207713-43-2-204. View

15.

Chun J, Lee J, Jung Y, Kim M, Kim S, Kim B . EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol. 2007; 57(Pt 10):2259-2261. DOI: 10.1099/ijs.0.64915-0. View

16.

Felsenstein J . CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP. Evolution. 2017; 39(4):783-791. DOI: 10.1111/j.1558-5646.1985.tb00420.x. View

17.

Mesbah M, Whitman W . Measurement of deoxyguanosine/thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine + cytosine of DNA. J Chromatogr. 1989; 479(2):297-306. DOI: 10.1016/s0021-9673(01)83344-6. View

18.

Kim M, Jo S, Roh S, Bae J . Alishewanella agri sp. nov., isolated from landfill soil. Int J Syst Evol Microbiol. 2009; 60(Pt 9):2199-2203. DOI: 10.1099/ijs.0.011684-0. View