» Articles » PMID: 23616879

TRIAD: The Translational Research Informatics and Data Management Grid

Overview
Publisher Thieme
Date 2013 Apr 26
PMID 23616879
Citations 11
Authors
Affiliations
Soon will be listed here.
Abstract

Objective: Multi-disciplinary and multi-site biomedical research programs frequently require infrastructures capable of enabling the collection, management, analysis, and dissemination of heterogeneous, multi-dimensional, and distributed data and knowledge collections spanning organizational boundaries. We report on the design and initial deployment of an extensible biomedical informatics platform that is intended to address such requirements.

Methods: A common approach to distributed data, information, and knowledge management needs in the healthcare and life science settings is the deployment and use of a service-oriented architecture (SOA). Such SOA technologies provide for strongly-typed, semantically annotated, and stateful data and analytical services that can be combined into data and knowledge integration and analysis "pipelines." Using this overall design pattern, we have implemented and evaluated an extensible SOA platform for clinical and translational science applications known as the Translational Research Informatics and Data-management grid (TRIAD). TRIAD is a derivative and extension of the caGrid middleware and has an emphasis on supporting agile "working interoperability" between data, information, and knowledge resources.

Results: Based upon initial verification and validation studies conducted in the context of a collection of driving clinical and translational research problems, we have been able to demonstrate that TRIAD achieves agile "working interoperability" between distributed data and knowledge sources.

Conclusion: Informed by our initial verification and validation studies, we believe TRIAD provides an example instance of a lightweight and readily adoptable approach to the use of SOA technologies in the clinical and translational research setting. Furthermore, our initial use cases illustrate the importance and efficacy of enabling "working interoperability" in heterogeneous biomedical environments.

Citing Articles

Simplifying Multimodal Clinical Research Data Management: Introducing an Integrated and User-friendly Database Concept.

Schweinar A, Wagner F, Klingner C, Festag S, Spreckelsen C, Brodoehl S Appl Clin Inform. 2024; 15(2):234-249.

PMID: 38301729 PMC: 10972680. DOI: 10.1055/a-2259-0008.


Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium.

Gu W, Yildirimman R, Van der Stuyft E, Verbeeck D, Herzinger S, Satagopam V BMC Bioinformatics. 2019; 20(1):164.

PMID: 30935364 PMC: 6444691. DOI: 10.1186/s12859-019-2748-y.


Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases.

Satagopam V, Gu W, Eifes S, Gawron P, Ostaszewski M, Gebel S Big Data. 2016; 4(2):97-108.

PMID: 27441714 PMC: 4932659. DOI: 10.1089/big.2015.0057.


A Modular Architecture for Electronic Health Record-Driven Phenotyping.

Rasmussen L, Kiefer R, Mo H, Speltz P, Thompson W, Jiang G AMIA Jt Summits Transl Sci Proc. 2015; 2015:147-51.

PMID: 26306258 PMC: 4525215.


A system to build distributed multivariate models and manage disparate data sharing policies: implementation in the scalable national network for effectiveness research.

Meeker D, Jiang X, Matheny M, Farcas C, DArcy M, Pearlman L J Am Med Inform Assoc. 2015; 22(6):1187-95.

PMID: 26142423 PMC: 4639714. DOI: 10.1093/jamia/ocv017.


References
1.
Chung T, Kukafka R, Johnson S . Reengineering clinical research with informatics. J Investig Med. 2006; 54(6):327-33. DOI: 10.2310/6650.2006.06014. View

2.
Pathak J, Solbrig H, Buntrock J, Johnson T, Chute C . LexGrid: a framework for representing, storing, and querying biomedical terminologies from simple to sublime. J Am Med Inform Assoc. 2009; 16(3):305-15. PMC: 2732233. DOI: 10.1197/jamia.M3006. View

3.
Zerhouni E . Translational research: moving discovery to practice. Clin Pharmacol Ther. 2006; 81(1):126-8. DOI: 10.1038/sj.clpt.6100029. View

4.
Brandt C, Argraves S, Money R, Ananth G, Trocky N, Nadkarni P . Informatics tools to improve clinical research study implementation. Contemp Clin Trials. 2006; 27(2):112-22. DOI: 10.1016/j.cct.2005.11.013. View

5.
Borlawsky T, Dhaval R, Hastings S, Payne P . Development of an agile knowledge engineering framework in support of multi-disciplinary translational research. Summit Transl Bioinform. 2011; 2009:14-8. PMC: 3041563. View