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The Average Local Ionization Energy As a Tool for Identifying Reactive Sites on Defect-containing Model Graphene Systems

Overview
Journal J Mol Model
Publisher Springer
Specialty Molecular Biology
Date 2012 Dec 1
PMID 23197325
Citations 9
Authors
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Abstract

In a continuing effort to further explore the use of the average local ionization energy [Formula: see text] as a computational tool, we have investigated how well [Formula: see text] computed on molecular surfaces serves as a predictive tool for identifying the sites of the more reactive electrons in several nonplanar defect-containing model graphene systems, each containing one or more pentagons. They include corannulene (C20H10), two inverse Stone-Thrower-Wales defect-containing structures C26H12 and C42H16, and a nanotube cap model C22H6, whose end is formed by three fused pentagons. Coronene (C24H12) has been included as a reference planar defect-free graphene model. We have optimized the structures of these systems as well as several monohydrogenated derivatives at the B3PW91/6-31G* level, and have computed their I(r) on molecular surfaces corresponding to the 0.001 au, 0.003 au and 0.005 au contours of the electronic density. We find that (1) the convex sides of the interior carbons of the nonplanar models are more reactive than the concave sides, and (2) the magnitudes of the lowest I(r) surface minima (the I S, min) correlate well with the interaction energies for hydrogenation at these sites. These I S, min values decrease in magnitude as the nonplanarity of the site increases, consistent with earlier studies. A practical benefit of the use of I(r) is that a single calculation suffices to characterize the numerous sites on a large molecular system, such as graphene and defect-containing graphene models.

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References
1.
Wang Y, Qian H, Morokuma K, Irle S . Coupled cluster and density functional theory calculations of atomic hydrogen chemisorption on pyrene and coronene as model systems for graphene hydrogenation. J Phys Chem A. 2012; 116(26):7154-60. DOI: 10.1021/jp3023666. View

2.
Bulat F, Burgess J, Matis B, Baldwin J, Macaveiu L, Murray J . Hydrogenation and fluorination of graphene models: analysis via the average local ionization energy. J Phys Chem A. 2012; 116(33):8644-52. DOI: 10.1021/jp3053604. View

3.
Hernandez Rosas J, Ramirez Gutierrez R, Escobedo-Morales A, Anota E . First principles calculations of the electronic and chemical properties of graphene, graphane, and graphene oxide. J Mol Model. 2010; 17(5):1133-9. DOI: 10.1007/s00894-010-0818-1. View

4.
Politzer P, Murray J, Bulat F . Average local ionization energy: A review. J Mol Model. 2010; 16(11):1731-42. DOI: 10.1007/s00894-010-0709-5. View

5.
Boukhvalov D, Katsnelson M . Chemical functionalization of graphene with defects. Nano Lett. 2009; 8(12):4373-9. DOI: 10.1021/nl802098g. View