» Articles » PMID: 23185140

Coupling Quantum Interpretative Techniques: Another Look at Chemical Mechanisms in Organic Reactions

Overview
Specialties Biochemistry
Chemistry
Date 2012 Nov 28
PMID 23185140
Citations 17
Authors
Affiliations
Soon will be listed here.
Abstract

A cross ELF-NCI analysis is tested over prototypical organic reactions. The synergetic use of ELF and NCI enables the understanding of reaction mechanisms since each method can respectively identify regions of strong and weak electron pairing. Chemically intuitive results are recovered and enriched by the identification of new features. Non covalent interactions are found to foresee the evolution of the reaction from the initial steps. Within NCI, no topological catastrophe is observed as changes are continuous to such an extent that future reaction steps can be predicted from the evolution of the initial NCI critical points. Indeed, strong convergences through the reaction paths between ELF and NCI critical points enable to identify key interactions at the origin of the bond formation. VMD scripts enabling the automatic generation of movies depicting the cross NCI/ELF analysis along a reaction path (or following a Born-Oppenheimer molecular dynamics trajectory) are provided as S.I.

Citing Articles

Silver-Free Gold-Catalyzed Heterocyclizations through Intermolecular H-Bonding Activation.

Elias-Rodriguez P, Matador E, Benitez M, Tejero T, Diez E, Fernandez R J Org Chem. 2023; 88(4):2487-2492.

PMID: 36704838 PMC: 9942198. DOI: 10.1021/acs.joc.2c02932.


Unveiling the Shape of -Acetylgalactosamine: A Cancer-Associated Sugar Derivative.

Aguado R, Sanz-Novo M, Mata S, Leon I, Alonso J J Phys Chem A. 2022; 126(42):7621-7626.

PMID: 36099577 PMC: 9620139. DOI: 10.1021/acs.jpca.2c04595.


Topological investigation of the reaction mechanism of glycerol carbonate decomposition by bond evolution theory.

Adjieufack A, Liegeois V, Mbouombouo Ndassa I, Champagne B RSC Adv. 2022; 11(17):10083-10093.

PMID: 35423535 PMC: 8695523. DOI: 10.1039/d0ra09755a.


Alkaline earth atom doping-induced changes in the electronic and magnetic properties of graphene: a density functional theory study.

Serraon A, Del Rosario J, Chuang P, Chong M, Morikawa Y, Padama A RSC Adv. 2022; 11(11):6268-6283.

PMID: 35423162 PMC: 8694801. DOI: 10.1039/d0ra08115a.


Absence of Intermediates in the BINOL-Derived Mg(II)/Phosphate-Catalyzed Desymmetrizative Ring Expansion of 1-Vinylcyclobutanols.

Capel E, Rodriguez-Rodriguez M, Uria U, Pedron M, Tejero T, Vicario J J Org Chem. 2021; 87(1):693-707.

PMID: 34928602 PMC: 8749959. DOI: 10.1021/acs.joc.1c02699.


References
1.
Contreras-Garcia J, Johnson E, Keinan S, Chaudret R, Piquemal J, Beratan D . NCIPLOT: a program for plotting non-covalent interaction regions. J Chem Theory Comput. 2011; 7(3):625-632. PMC: 3080048. DOI: 10.1021/ct100641a. View

2.
Lee , Yang , PARR . Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Phys Rev B Condens Matter. 1988; 37(2):785-789. DOI: 10.1103/physrevb.37.785. View

3.
Polo V, Andres J, Castillo R, Berski S, Silvi B . Understanding the molecular mechanism of the 1,3-dipolar cycloaddition between fulminic acid and acetylene in terms of the electron localization function and catastrophe theory. Chemistry. 2004; 10(20):5165-72. DOI: 10.1002/chem.200400161. View

4.
Pilme J, Piquemal J . Advancing beyond charge analysis using the electronic localization function: Chemically intuitive distribution of electrostatic moments. J Comput Chem. 2008; 29(9):1440-9. DOI: 10.1002/jcc.20904. View

5.
Johnson E, Keinan S, Mori-Sanchez P, Contreras-Garcia J, Cohen A, Yang W . Revealing noncovalent interactions. J Am Chem Soc. 2010; 132(18):6498-506. PMC: 2864795. DOI: 10.1021/ja100936w. View