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The First Structure of Polarity Suppression Protein, Psu from Enterobacteria Phage P4, Reveals a Novel Fold and a Knotted Dimer

Overview
Journal J Biol Chem
Specialty Biochemistry
Date 2012 Nov 15
PMID 23150672
Citations 14
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Abstract

Psu is a capsid decoration protein of bacteriophage P4 and acts as an antiterminator of Rho-dependent transcription termination in bacteria. So far, no structures have been reported for the Psu protein or its homologues. Here, we report the first structure of Psu solved by the Hg(2+) single wavelength anomalous dispersion method, which reveals that Psu exists as a knotted homodimer and is first of its kind in nature. Each monomer of Psu attains a novel fold around a tight coiled-coil motif. CD spectroscopy and the structure of an engineered disulfide-bridged Psu derivative reveal that the protein folds reversibly and reassembles by itself into the knotted dimeric conformation without the requirement of any chaperone. This structure would help to explain the functional properties of the protein and can be used as a template to design a minimal peptide fragment that can be used as a drug against Rho-dependent transcription termination in bacteria.

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References
1.
Holm L, Rosenstrom P . Dali server: conservation mapping in 3D. Nucleic Acids Res. 2010; 38(Web Server issue):W545-9. PMC: 2896194. DOI: 10.1093/nar/gkq366. View

2.
Davis I, Murray L, Richardson J, Richardson D . MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes. Nucleic Acids Res. 2004; 32(Web Server issue):W615-9. PMC: 441536. DOI: 10.1093/nar/gkh398. View

3.
Bond C . TopDraw: a sketchpad for protein structure topology cartoons. Bioinformatics. 2003; 19(2):311-2. DOI: 10.1093/bioinformatics/19.2.311. View

4.
Dokland T, Isaksen M, Fuller S, Lindqvist B . Capsid localization of the bacteriophage P4 Psu protein. Virology. 1993; 194(2):682-7. DOI: 10.1006/viro.1993.1308. View

5.
Isaksen M, Rishovd S, Calendar R, Lindqvist B . The polarity suppression factor of bacteriophage P4 is also a decoration protein of the P4 capsid. Virology. 1992; 188(2):831-9. DOI: 10.1016/0042-6822(92)90538-z. View