Draft Genome Sequence of the Sponge-associated Strain Bacillus Atrophaeus C89, a Potential Producer of Marine Drugs

Overview

Journal J Bacteriol

Publisher American Society for Microbiology

Specialty Microbiology

Date 2012 Jul 31

PMID 22843588

Citations 5

Authors

Fang Liu

Wei Sun

Fei Su

Kang Zhou

Zhiyong Li

Affiliations

Soon will be listed here.

Abstract

Bacillus atrophaeus C89, isolated from the marine sponge Dysidea avara, is a potential producer of bioactive compounds, such as neobacillamide A and bacillamide C. Here, we present a 4.2-Mb assembly of its genome. The nonribosomal peptide synthetases (NRPSs) make it possible to produce the bioactive compounds.

Citing Articles

Comparative genomic analysis of HAB-5 reveals genes associated with antimicrobial and plant growth-promoting activities.

Dahar G, Wang H, Rajer F, Jin P, Xu P, Abro M Front Microbiol. 2024; 15:1384691.

PMID: 38989016 PMC: 11233526. DOI: 10.3389/fmicb.2024.1384691.

Analysis of the Complete Genome Sequence of GQJK17 Reveals Its Biocontrol Characteristics as a Plant Growth-Promoting Rhizobacterium.

Ma J, Wang C, Wang H, Liu K, Zhang T, Yao L Biomed Res Int. 2018; 2018:9473542.

PMID: 30046614 PMC: 6038694. DOI: 10.1155/2018/9473542.

Substrate selection of adenylation domains for nonribosomal peptide synthetase (NRPS) in bacillamide C biosynthesis by marine Bacillus atrophaeus C89.

Zhang F, Wang Y, Jiang Q, Chen Q, Karthik L, Zhao Y J Ind Microbiol Biotechnol. 2018; 45(5):335-344.

PMID: 29572612 DOI: 10.1007/s10295-018-2028-2.

Antimicrobial activities of secondary metabolites and phylogenetic study of sponge endosymbiotic bacteria, sp. at Agatti Island, Lakshadweep Archipelago.

Mohan G, Thipparamalai Thangappanpillai A, Ramasamy B Biotechnol Rep (Amst). 2017; 11:44-52.

PMID: 28352539 PMC: 5042297. DOI: 10.1016/j.btre.2016.06.001.

The role of aromatic L-amino acid decarboxylase in bacillamide C biosynthesis by Bacillus atrophaeus C89.

Yuwen L, Zhang F, Chen Q, Lin S, Zhao Y, Li Z Sci Rep. 2013; 3:1753.

PMID: 23628927 PMC: 3639450. DOI: 10.1038/srep01753.

References

Tatusov R, Fedorova N, Jackson J, Jacobs A, Kiryutin B, Koonin E . The COG database: an updated version includes eukaryotes. BMC Bioinformatics. 2003; 4:41. PMC: 222959. DOI: 10.1186/1471-2105-4-41. View

Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z . De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 2009; 20(2):265-72. PMC: 2813482. DOI: 10.1101/gr.097261.109. View

Preston G . Metropolitan microbes: type III secretion in multihost symbionts. Cell Host Microbe. 2007; 2(5):291-4. DOI: 10.1016/j.chom.2007.10.004. View

Ogata H, Goto S, Fujibuchi W, Kanehisa M . Computation with the KEGG pathway database. Biosystems. 1998; 47(1-2):119-28. DOI: 10.1016/s0303-2647(98)00017-3. View

Lagesen K, Hallin P, Rodland E, Staerfeldt H, Rognes T, Ussery D . RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 2007; 35(9):3100-8. PMC: 1888812. DOI: 10.1093/nar/gkm160. View