» Articles » PMID: 22689228

Draft Genome Sequence of Thermus Sp. Strain RL, Isolated from a Hot Water Spring Located Atop the Himalayan Ranges at Manikaran, India

Overview
Journal J Bacteriol
Specialty Microbiology
Date 2012 Jun 13
PMID 22689228
Citations 14
Authors
Affiliations
Soon will be listed here.
Abstract

Thermus sp. strain RL was isolated from a hot water spring (90°C to 98°C) at Manikaran, Himachal Pradesh, India. Here we report the draft genome sequence (20,36,600 bp) of this strain. The draft genome sequence consists of 17 contigs and 1,986 protein-coding sequences and has an average G+C content of 68.77%.

Citing Articles

AmiP from hyperthermophilic Thermus parvatiensis prophage is a thermoactive and ultrathermostable peptidoglycan lytic amidase.

Jasilionis A, Plotka M, Wang L, Dorawa S, Lange J, Watzlawick H Protein Sci. 2023; 32(3):e4585.

PMID: 36721347 PMC: 9929850. DOI: 10.1002/pro.4585.


Bacterial diversity in 110 thermal hot springs of Indian Himalayan Region (IHR).

Verma J, Sourirajan A, Dev K 3 Biotech. 2022; 12(9):238.

PMID: 36003895 PMC: 9393120. DOI: 10.1007/s13205-022-03270-8.


Genome Sequencing Revealed the Biotechnological Potential of an Obligate Thermophile Strain RL Isolated from Hot Water Spring.

Narain Singh D, Sood U, Singh A, Gupta V, Shakarad M, Rawat C Indian J Microbiol. 2019; 59(3):351-355.

PMID: 31388213 PMC: 6646505. DOI: 10.1007/s12088-019-00809-x.


Draft Genome Sequence of sp. Strain S9, Isolated from Microbial Mat Deposits of Hot Springs Located atop the Himalayan Ranges at Manikaran, India.

Talwar C, Singh A, Narain Singh D, Nagar S, Singh Y, Shakarad M Microbiol Resour Announc. 2019; 8(28).

PMID: 31296675 PMC: 6624758. DOI: 10.1128/MRA.00316-19.


Bacterial and Archaeal Viruses of Himalayan Hot Springs at Manikaran Modulate Host Genomes.

Sharma A, Schmidt M, Kiesel B, Mahato N, Cralle L, Singh Y Front Microbiol. 2019; 9:3095.

PMID: 30619174 PMC: 6302217. DOI: 10.3389/fmicb.2018.03095.


References
1.
Lowe T, Eddy S . tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997; 25(5):955-64. PMC: 146525. DOI: 10.1093/nar/25.5.955. View

2.
Gounder K, Brzuszkiewicz E, Liesegang H, Wollherr A, Daniel R, Gottschalk G . Sequence of the hyperplastic genome of the naturally competent Thermus scotoductus SA-01. BMC Genomics. 2011; 12:577. PMC: 3235269. DOI: 10.1186/1471-2164-12-577. View

3.
Bartels D, Kespohl S, Albaum S, Druke T, Goesmann A, Herold J . BACCardI--a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics. 2004; 21(7):853-9. DOI: 10.1093/bioinformatics/bti091. View

4.
Teh B, Rahman A, Saito J, Hou S, Alam M . Complete genome sequence of the thermophilic bacterium Thermus sp. strain CCB_US3_UF1. J Bacteriol. 2012; 194(5):1240. PMC: 3294796. DOI: 10.1128/JB.06589-11. View

5.
Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M . The KEGG resource for deciphering the genome. Nucleic Acids Res. 2003; 32(Database issue):D277-80. PMC: 308797. DOI: 10.1093/nar/gkh063. View