Layoun P, Lopez-Perez M, Haro-Moreno J, Haber M, Thrash J, Henson M
ISME J. 2024; 18(1).
PMID: 38365254
PMC: 10872708.
DOI: 10.1093/ismejo/wrad036.
Yang M, Du S, Zhang Z, Xia Q, Liu H, Qin F
Microbiol Spectr. 2023; :e0494222.
PMID: 37607063
PMC: 10580990.
DOI: 10.1128/spectrum.04942-22.
Alejandre-Colomo C, Francis B, Viver T, Harder J, Fuchs B, Rossello-Mora R
ISME Commun. 2023; 1(1):51.
PMID: 36747039
PMC: 9723794.
DOI: 10.1038/s43705-021-00052-w.
Ramachandran A, McLatchie S, Walsh D
mBio. 2021; 12(3):e0130621.
PMID: 34154421
PMC: 8262872.
DOI: 10.1128/mBio.01306-21.
Yang M, Xia Q, Du S, Zhang Z, Qin F, Zhao Y
Front Microbiol. 2021; 12:651326.
PMID: 33841378
PMC: 8024684.
DOI: 10.3389/fmicb.2021.651326.
Expanding the Diversity of Bacterioplankton Isolates and Modeling Isolation Efficacy with Large-Scale Dilution-to-Extinction Cultivation.
Henson M, Lanclos V, Pitre D, Weckhorst J, Lucchesi A, Cheng C
Appl Environ Microbiol. 2020; 86(17).
PMID: 32561583
PMC: 7440811.
DOI: 10.1128/AEM.00943-20.
Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae.
Salcher M, Schaefle D, Kaspar M, Neuenschwander S, Ghai R
ISME J. 2019; 13(11):2764-2777.
PMID: 31292537
PMC: 6794327.
DOI: 10.1038/s41396-019-0471-3.
Lanthanide-Dependent Methanol Dehydrogenases of XoxF4 and XoxF5 Clades Are Differentially Distributed Among Methylotrophic Bacteria and They Reveal Different Biochemical Properties.
Huang J, Yu Z, Chistoserdova L
Front Microbiol. 2018; 9:1366.
PMID: 29997591
PMC: 6028718.
DOI: 10.3389/fmicb.2018.01366.
Rapid Formation of Microbe-Oil Aggregates and Changes in Community Composition in Coastal Surface Water Following Exposure to Oil and the Dispersant Corexit.
Doyle S, Whitaker E, De Pascuale V, Wade T, Knap A, Santschi P
Front Microbiol. 2018; 9:689.
PMID: 29696005
PMC: 5904270.
DOI: 10.3389/fmicb.2018.00689.
Quantitative Transcriptomics Reveals the Growth- and Nutrient-Dependent Response of a Streamlined Marine Methylotroph to Methanol and Naturally Occurring Dissolved Organic Matter.
Gifford S, Becker J, Sosa O, Repeta D, DeLong E
mBio. 2016; 7(6).
PMID: 27879330
PMC: 5120137.
DOI: 10.1128/mBio.01279-16.
Wide Distribution of Genes for Tetrahydromethanopterin/Methanofuran-Linked C1 Transfer Reactions Argues for Their Presence in the Common Ancestor of Bacteria and Archaea.
Chistoserdova L
Front Microbiol. 2016; 7:1425.
PMID: 27679616
PMC: 5020050.
DOI: 10.3389/fmicb.2016.01425.
Expanding the World of Marine Bacterial and Archaeal Clades.
Yilmaz P, Yarza P, Rapp J, Glockner F
Front Microbiol. 2016; 6:1524.
PMID: 26779174
PMC: 4705458.
DOI: 10.3389/fmicb.2015.01524.
Comprehensive Genomic Analyses of the OM43 Clade, Including a Novel Species from the Red Sea, Indicate Ecotype Differentiation among Marine Methylotrophs.
Jimenez-Infante F, Ngugi D, Vinu M, Alam I, Kamau A, Blom J
Appl Environ Microbiol. 2015; 82(4):1215-1226.
PMID: 26655752
PMC: 4751848.
DOI: 10.1128/AEM.02852-15.
Expansion of Cultured Bacterial Diversity by Large-Scale Dilution-to-Extinction Culturing from a Single Seawater Sample.
Yang S, Kang I, Cho J
Microb Ecol. 2015; 71(1):29-43.
PMID: 26573832
DOI: 10.1007/s00248-015-0695-3.
High molecular weight dissolved organic matter enrichment selects for methylotrophs in dilution to extinction cultures.
Sosa O, Gifford S, Repeta D, DeLong E
ISME J. 2015; 9(12):2725-39.
PMID: 25978545
PMC: 4817625.
DOI: 10.1038/ismej.2015.68.
The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign.
Salcher M, Neuenschwander S, Posch T, Pernthaler J
ISME J. 2015; 9(11):2442-53.
PMID: 25942006
PMC: 4611508.
DOI: 10.1038/ismej.2015.55.
Evolution of small prokaryotic genomes.
Martinez-Cano D, Reyes-Prieto M, Martinez-Romero E, Partida-Martinez L, Latorre A, Moya A
Front Microbiol. 2015; 5:742.
PMID: 25610432
PMC: 4285135.
DOI: 10.3389/fmicb.2014.00742.
The expanded diversity of methylophilaceae from Lake Washington through cultivation and genomic sequencing of novel ecotypes.
Beck D, McTaggart T, Setboonsarng U, Vorobev A, Kalyuzhnaya M, Ivanova N
PLoS One. 2014; 9(7):e102458.
PMID: 25058595
PMC: 4109929.
DOI: 10.1371/journal.pone.0102458.
Comparative transcriptomics in three Methylophilaceae species uncover different strategies for environmental adaptation.
Vorobev A, Beck D, Kalyuzhnaya M, Lidstrom M, Chistoserdova L
PeerJ. 2013; 1:e115.
PMID: 23904993
PMC: 3728764.
DOI: 10.7717/peerj.115.
Streamlining and core genome conservation among highly divergent members of the SAR11 clade.
Grote J, Thrash J, Huggett M, Landry Z, Carini P, Giovannoni S
mBio. 2012; 3(5).
PMID: 22991429
PMC: 3448164.
DOI: 10.1128/mBio.00252-12.