» Articles » PMID: 22532809

Long-range Chromosome Organization in E. Coli: a Site-specific System Isolates the Ter Macrodomain

Overview
Journal PLoS Genet
Specialty Genetics
Date 2012 Apr 26
PMID 22532809
Citations 28
Authors
Affiliations
Soon will be listed here.
Abstract

The organization of the Escherichia coli chromosome into a ring composed of four macrodomains and two less-structured regions influences the segregation of sister chromatids and the mobility of chromosomal DNA. The structuring of the terminus region (Ter) into a macrodomain relies on the interaction of the protein MatP with a 13-bp target called matS repeated 23 times in the 800-kb-long domain. Here, by using a new method that allows the transposition of any chromosomal segment at a defined position on the genetic map, we reveal a site-specific system that restricts to the Ter region a constraining process that reduces DNA mobility and delays loci segregation. Remarkably, the constraining process is regulated during the cell cycle and occurs only when the Ter MD is associated with the division machinery at mid-cell. The change of DNA properties does not rely on the presence of a trans-acting mechanism but rather involves a cis-effect acting at a long distance from the Ter region. Two specific 12-bp sequences located in the flanking Left and Right macrodomains and a newly identified protein designated YfbV conserved with MatP through evolution are required to impede the spreading of the constraining process to the rest of the chromosome. Our results unravel a site-specific system required to restrict to the Ter region the consequences of anchoring the Ter MD to the division machinery.

Citing Articles

Spatio-temporal organization of the chromosome from base to cellular length scales.

Royzenblat S, Freddolino L EcoSal Plus. 2024; 12(1):eesp00012022.

PMID: 38864557 PMC: 11636183. DOI: 10.1128/ecosalplus.esp-0001-2022.


Activity of MukBEF for chromosome management in and its inhibition by MatP.

Seba M, Boccard F, Duigou S Elife. 2024; 12.

PMID: 38315099 PMC: 10945525. DOI: 10.7554/eLife.91185.


Interpretation of organizational role of proteins on E. coli nucleoid via Hi-C integrated model.

Wasim A, Gupta A, Bera P, Mondal J Biophys J. 2022; 122(1):63-81.

PMID: 36435970 PMC: 9822802. DOI: 10.1016/j.bpj.2022.11.2938.


Long-term effects of the proline-rich antimicrobial peptide Oncocin112 on the translation machinery.

Zhu Y, Weisshaar J, Mustafi M J Biol Chem. 2020; 295(38):13314-13325.

PMID: 32727850 PMC: 7504922. DOI: 10.1074/jbc.RA120.013587.


Chromosome Segregation Proteins as Coordinators of Cell Cycle in Response to Environmental Conditions.

Pioro M, Jakimowicz D Front Microbiol. 2020; 11:588.

PMID: 32351468 PMC: 7174722. DOI: 10.3389/fmicb.2020.00588.


References
1.
Bliska J, Cozzarelli N . Use of site-specific recombination as a probe of DNA structure and metabolism in vivo. J Mol Biol. 1987; 194(2):205-18. DOI: 10.1016/0022-2836(87)90369-x. View

2.
Postow L, Hardy C, Arsuaga J, Cozzarelli N . Topological domain structure of the Escherichia coli chromosome. Genes Dev. 2004; 18(14):1766-79. PMC: 478196. DOI: 10.1101/gad.1207504. View

3.
Thanbichler M, Shapiro L . Chromosome organization and segregation in bacteria. J Struct Biol. 2006; 156(2):292-303. DOI: 10.1016/j.jsb.2006.05.007. View

4.
Cooper S, Helmstetter C . Chromosome replication and the division cycle of Escherichia coli B/r. J Mol Biol. 1968; 31(3):519-40. DOI: 10.1016/0022-2836(68)90425-7. View

5.
Yu D, Ellis H, Lee E, Jenkins N, Copeland N, Court D . An efficient recombination system for chromosome engineering in Escherichia coli. Proc Natl Acad Sci U S A. 2000; 97(11):5978-83. PMC: 18544. DOI: 10.1073/pnas.100127597. View