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A Spliced Leader is Present on a Subset of MRNAs from the Human Parasite Schistosoma Mansoni

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Specialty Science
Date 1990 Nov 1
PMID 2247461
Citations 58
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Abstract

We present evidence that a subset of mRNAs in the human parasitic trematode Schistosoma mansoni contain an identical 36-nucleotide spliced leader (SL) sequence at their 5' termini. The SL is derived from a 90-nucleotide nonpolyadenylylated RNA (SL RNA), presumably by trans-splicing. Neither the SL nor the SL RNA share significant sequence identity with previously described trans-spliced leaders and SL RNAs in trypanosomatid protozoans or nematodes. However, several features, such as predicted secondary structure, trimethylguanosine cap, and potential Sm binding site, suggest similarities among SL RNAs in widely divergent organisms. Our evidence also indicates that the exon 3 acceptor site of the 3-hydroxy-3-methylglutaryl-CoA reductase gene can be spliced either to the SL by trans-splicing or to an upstream exon, 2, by cis-splicing. The presence of a SL sequence in S. mansoni, a member of the phylum Platyhelminthes, suggests that transplicing may be a common feature of other lower invertebrates.

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References
1.
Sutton R, Boothroyd J . The cap of both miniexon-derived RNA and mRNA of trypanosomes is 7-methylguanosine. Mol Cell Biol. 1988; 8(1):494-6. PMC: 363158. DOI: 10.1128/mcb.8.1.494-496.1988. View

2.
Perry K, Watkins K, Agabian N . Trypanosome mRNAs have unusual "cap 4" structures acquired by addition of a spliced leader. Proc Natl Acad Sci U S A. 1987; 84(23):8190-4. PMC: 299507. DOI: 10.1073/pnas.84.23.8190. View

3.
Bektesh S, Hirsh D . C. elegans mRNAs acquire a spliced leader through a trans-splicing mechanism. Nucleic Acids Res. 1988; 16(12):5692. PMC: 336799. DOI: 10.1093/nar/16.12.5692. View

4.
Thomas J, Conrad R, Blumenthal T . The C. elegans trans-spliced leader RNA is bound to Sm and has a trimethylguanosine cap. Cell. 1988; 54(4):533-9. DOI: 10.1016/0092-8674(88)90075-x. View

5.
Van Doren K, Hirsh D . Trans-spliced leader RNA exists as small nuclear ribonucleoprotein particles in Caenorhabditis elegans. Nature. 1988; 335(6190):556-9. DOI: 10.1038/335556a0. View