» Articles » PMID: 22419780

SEQanswers: an Open Access Community for Collaboratively Decoding Genomes

Overview
Journal Bioinformatics
Specialty Biology
Date 2012 Mar 16
PMID 22419780
Citations 23
Authors
Affiliations
Soon will be listed here.
Abstract

Summary: The affordability of high-throughput sequencing has created an unprecedented surge in the use of genomic data in basic, translational and clinical research. The rapid evolution of sequencing technology, coupled with its broad adoption across biology and medicine, necessitates fast, collaborative interdisciplinary discussion. SEQanswers provides a real-time knowledge-sharing resource to address this need, covering experimental and computational aspects of sequencing and sequence analysis. Developers of popular analysis tools are among the >4000 active members, and ~40 peer-reviewed publications have referenced SEQanswers.

Availability: The SEQanswers community is freely accessible at http://SEQanswers.com/

Citing Articles

BioTreasury: a community-based repository enabling indexing and rating of bioinformatics tools.

Zhao Q, Zhou X, Wu J, Cai J, Bao X, Tang L Sci China Life Sci. 2023; 67(2):221-229.

PMID: 38157107 DOI: 10.1007/s11427-023-2509-x.


Client Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite.

Hafez A, Soriano B, Elsayed A, Futami R, Ceprian R, Ramos-Ruiz R Genes (Basel). 2023; 14(2).

PMID: 36833195 PMC: 9957322. DOI: 10.3390/genes14020267.


The ISCB Student Council Internship Program: Expanding computational biology capacity worldwide.

Anupama J, Francescatto M, Rahman F, Fatima N, DeBlasio D, Shanmugam A PLoS Comput Biol. 2018; 14(1):e1005802.

PMID: 29346365 PMC: 5772997. DOI: 10.1371/journal.pcbi.1005802.


High Throughput Sequencing for Detection of Foodborne Pathogens.

Sekse C, Holst-Jensen A, Dobrindt U, Johannessen G, Li W, Spilsberg B Front Microbiol. 2017; 8:2029.

PMID: 29104564 PMC: 5655695. DOI: 10.3389/fmicb.2017.02029.


Continuing Education Workshops in Bioinformatics Positively Impact Research and Careers.

Brazas M, Ouellette B PLoS Comput Biol. 2016; 12(6):e1004916.

PMID: 27281025 PMC: 4900641. DOI: 10.1371/journal.pcbi.1004916.


References
1.
Abecasis G, Altshuler D, Auton A, Brooks L, Durbin R, Gibbs R . A map of human genome variation from population-scale sequencing. Nature. 2010; 467(7319):1061-73. PMC: 3042601. DOI: 10.1038/nature09534. View

2.
Alkan C, Sajjadian S, Eichler E . Limitations of next-generation genome sequence assembly. Nat Methods. 2010; 8(1):61-5. PMC: 3115693. DOI: 10.1038/nmeth.1527. View

3.
Mardis E . The $1,000 genome, the $100,000 analysis?. Genome Med. 2010; 2(11):84. PMC: 3016626. DOI: 10.1186/gm205. View

4.
. Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature. 2008; 455(7216):1061-8. PMC: 2671642. DOI: 10.1038/nature07385. View

5.
Peterson J, Garges S, Giovanni M, McInnes P, Wang L, Schloss J . The NIH Human Microbiome Project. Genome Res. 2009; 19(12):2317-23. PMC: 2792171. DOI: 10.1101/gr.096651.109. View