» Articles » PMID: 22140107

SNPedia: a Wiki Supporting Personal Genome Annotation, Interpretation and Analysis

Overview
Specialty Biochemistry
Date 2011 Dec 6
PMID 22140107
Citations 113
Authors
Affiliations
Soon will be listed here.
Abstract

SNPedia (http://www.SNPedia.com) is a wiki resource of the functional consequences of human genetic variation as published in peer-reviewed studies. Online since 2006 and freely available for personal use, SNPedia has focused on the medical, phenotypic and genealogical associations of single nucleotide polymorphisms. Entries are formatted to allow associations to be assigned to single genotypes as well as sets of genotypes (genosets). In this article, we discuss the growth of this resource and its use by affiliated software to create personal genome reports.

Citing Articles

In-silico screening and analysis of missense SNPs in human CYP3A4/5 affecting drug-enzyme interactions of FDA-approved COVID-19 antiviral drugs.

Abdelazim A, Maged M, Abdelmaksoud A, Hassanein S Sci Rep. 2025; 15(1):2153.

PMID: 39819897 PMC: 11739396. DOI: 10.1038/s41598-025-85595-x.


GWAS of multiple neuropathology endophenotypes identifies new risk loci and provides insights into the genetic risk of dementia.

Shade L, Katsumata Y, Abner E, Aung K, Claas S, Qiao Q Nat Genet. 2024; 56(11):2407-2421.

PMID: 39379761 PMC: 11549054. DOI: 10.1038/s41588-024-01939-9.


Life history and ancestry of the late Upper Palaeolithic infant from Grotta delle Mura, Italy.

Higgins O, Modi A, Cannariato C, Diroma M, Lugli F, Ricci S Nat Commun. 2024; 15(1):8248.

PMID: 39304646 PMC: 11415373. DOI: 10.1038/s41467-024-51150-x.


Variant Impact Predictor database (VIPdb), version 2: trends from three decades of genetic variant impact predictors.

Lin Y, Menon A, Hu Z, Brenner S Hum Genomics. 2024; 18(1):90.

PMID: 39198917 PMC: 11360829. DOI: 10.1186/s40246-024-00663-z.


In Silico Deciphering of the Potential Impact of Variants of Uncertain Significance in Hereditary Colorectal Cancer Syndromes.

Fasano C, Lepore Signorile M, De Marco K, Forte G, Disciglio V, Sanese P Cells. 2024; 13(16.

PMID: 39195204 PMC: 11352798. DOI: 10.3390/cells13161314.


References
1.
Prlic A, Down T, Kulesha E, Finn R, Kahari A, Hubbard T . Integrating sequence and structural biology with DAS. BMC Bioinformatics. 2007; 8:333. PMC: 2031907. DOI: 10.1186/1471-2105-8-333. View

2.
Riordan J, Rommens J, Kerem B, Alon N, Rozmahel R, Grzelczak Z . Identification of the cystic fibrosis gene: cloning and characterization of complementary DNA. Science. 1989; 245(4922):1066-73. DOI: 10.1126/science.2475911. View

3.
Church G . The personal genome project. Mol Syst Biol. 2006; 1:2005.0030. PMC: 1681452. DOI: 10.1038/msb4100040. View

4.
Li Y, Zheng H, Luo R, Wu H, Zhu H, Li R . Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly. Nat Biotechnol. 2011; 29(8):723-30. DOI: 10.1038/nbt.1904. View

5.
Stein L, Mungall C, Shu S, Caudy M, Mangone M, Day A . The generic genome browser: a building block for a model organism system database. Genome Res. 2002; 12(10):1599-610. PMC: 187535. DOI: 10.1101/gr.403602. View