» Articles » PMID: 21959545

Detecting Hidden Spatial and Spatio-temporal Structures in Glasses and Complex Physical Systems by Multiresolution Network Clustering

Overview
Publisher EDP Sciences
Specialty Biophysics
Date 2011 Oct 1
PMID 21959545
Citations 5
Authors
Affiliations
Soon will be listed here.
Abstract

We elaborate on a general method that we recently introduced for characterizing the "natural" structures in complex physical systems via multi-scale network analysis. The method is based on "community detection" wherein interacting particles are partitioned into an "ideal gas" of optimally decoupled groups of particles. Specifically, we construct a set of network representations ("replicas") of the physical system based on interatomic potentials and apply a multiscale clustering ("multiresolution community detection") analysis using information-based correlations among the replicas. Replicas may i) be different representations of an identical static system, ii) embody dynamics by considering replicas to be time separated snapshots of the system (with a tunable time separation), or iii) encode general correlations when different replicas correspond to different representations of the entire history of the system as it evolves in space-time. Inputs for our method are the inter-particle potentials or experimentally measured two (or higher order) particle correlations. We apply our method to computer simulations of a binary Kob-Andersen Lennard-Jones system in a mixture ratio of A(80)B(20) , a ternary model system with components "A", "B", and "C" in ratios of A(88)B(7)C(5) (as in Al(88)Y(7)Fe(5) , and to atomic coordinates in a Zr(80)Pt(20) system as gleaned by reverse Monte Carlo analysis of experimentally determined structure factors. We identify the dominant structures (disjoint or overlapping) and general length scales by analyzing extrema of the information theory measures. We speculate on possible links between i) physical transitions or crossovers and ii) changes in structures found by this method as well as phase transitions associated with the computational complexity of the community detection problem. We also briefly consider continuum approaches and discuss rigidity and the shear penetration depth in amorphous systems; this latter length scale increases as the system becomes progressively rigid.

Citing Articles

Emergent structural correlations in dense liquids.

Pihlajamaa I, Laudicina C, Luo C, Janssen L PNAS Nexus. 2023; 2(6):pgad184.

PMID: 37342651 PMC: 10279420. DOI: 10.1093/pnasnexus/pgad184.


A nature inspired modularity function for unsupervised learning involving spatially embedded networks.

Kishore R, Gogineni A, Nussinov Z, Sahu K Sci Rep. 2019; 9(1):2631.

PMID: 30796343 PMC: 6385190. DOI: 10.1038/s41598-019-39180-8.


Think locally, act locally: detection of small, medium-sized, and large communities in large networks.

Jeub L, Balachandran P, Porter M, Mucha P, Mahoney M Phys Rev E Stat Nonlin Soft Matter Phys. 2015; 91(1):012821.

PMID: 25679670 PMC: 5125638. DOI: 10.1103/PhysRevE.91.012821.


Emergence of network features from multiplexity.

Cardillo A, Gomez-Gardenes J, Zanin M, Romance M, Papo D, Del Pozo F Sci Rep. 2013; 3:1344.

PMID: 23446838 PMC: 3583169. DOI: 10.1038/srep01344.


Detection of hidden structures for arbitrary scales in complex physical systems.

Ronhovde P, Chakrabarty S, Hu D, Sahu M, Sahu K, Kelton K Sci Rep. 2012; 2:329.

PMID: 22461970 PMC: 3314987. DOI: 10.1038/srep00329.

References
1.
Tanaka H, Kawasaki T, Shintani H, Watanabe K . Critical-like behaviour of glass-forming liquids. Nat Mater. 2010; 9(4):324-31. DOI: 10.1038/nmat2634. View

2.
Newman M . Finding community structure in networks using the eigenvectors of matrices. Phys Rev E Stat Nonlin Soft Matter Phys. 2006; 74(3 Pt 2):036104. DOI: 10.1103/PhysRevE.74.036104. View

3.
Widmer-Cooper A, Harrowell P, Fynewever H . How reproducible are dynamic heterogeneities in a supercooled liquid?. Phys Rev Lett. 2004; 93(13):135701. DOI: 10.1103/PhysRevLett.93.135701. View

4.
Luo W, Sheng H, Alamgir F, Bai J, He J, Ma E . Icosahedral short-range order in amorphous alloys. Phys Rev Lett. 2004; 92(14):145502. DOI: 10.1103/PhysRevLett.92.145502. View

5.
Gudkov V, Montealegre V, Nussinov S, Nussinov Z . Community detection in complex networks by dynamical simplex evolution. Phys Rev E Stat Nonlin Soft Matter Phys. 2008; 78(1 Pt 2):016113. DOI: 10.1103/PhysRevE.78.016113. View