» Articles » PMID: 21921300

A New ImageJ Plug-in "ActogramJ" for Chronobiological Analyses

Overview
Journal J Biol Rhythms
Date 2011 Sep 17
PMID 21921300
Citations 137
Authors
Affiliations
Soon will be listed here.
Abstract

While the rapid development of personal computers and high-throughput recording systems for circadian rhythms allow chronobiologists to produce huge amounts of data, the software to analyze them often lags behind. Here, we announce newly developed chronobiology software that is easy to use, compatible with many different systems, and freely available. Our system can perform the most frequently used analyses: actogram drawing, periodogram analysis, and waveform analysis. The software is distributed as a pure Java plug-in for ImageJ and so works on the 3 main operating systems: Linux, Macintosh, and Windows. We believe that this free software raises the speed of data analyses and makes studying chronobiology accessible to newcomers.

Citing Articles

Drosophila ubiquitin-specific peptidase 14 stabilizes the PERIOD protein by regulating a ubiquitin ligase SLIMB.

Kang S, Park J, Ok S, Um M, Son H, Byun S Commun Biol. 2025; 8(1):191.

PMID: 39920223 PMC: 11805992. DOI: 10.1038/s42003-025-07632-9.


Evaluation of the Digital Ventilated Cage® system for circadian phenotyping.

Tir S, Foster R, Peirson S Sci Rep. 2025; 15(1):3674.

PMID: 39880968 PMC: 11779816. DOI: 10.1038/s41598-025-87530-6.


Trithorax regulates long-term memory in Drosophila through epigenetic maintenance of mushroom body metabolic state and translation capacity.

Raun N, Jones S, Kerr O, Keung C, Butler E, Alka K PLoS Biol. 2025; 23(1):e3003004.

PMID: 39869640 PMC: 11835295. DOI: 10.1371/journal.pbio.3003004.


Sleep timing in flies from "adolescence" to adulthood.

Domenie E, Cusumano P, Montagnese S, Costa R Fly (Austin). 2025; 19(1):2448022.

PMID: 39773381 PMC: 11702927. DOI: 10.1080/19336934.2024.2448022.


In vivo functional significance of direct physical interaction between Period and Cryptochrome in mammalian circadian rhythm generation.

Kawabe J, Kajihara K, Matsuyama Y, Mori Y, Hamano T, Mimaki M PNAS Nexus. 2024; 3(12):pgae516.

PMID: 39677364 PMC: 11645128. DOI: 10.1093/pnasnexus/pgae516.