Narrow Scope for Resolution-limit-free Community Detection
Overview
Physiology
Public Health
Authors
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Detecting communities in large networks has drawn much attention over the years. While modularity remains one of the more popular methods of community detection, the so-called resolution limit remains a significant drawback. To overcome this issue, it was recently suggested that instead of comparing the network to a random null model, as is done in modularity, it should be compared to a constant factor. However, it is unclear what is meant exactly by "resolution-limit-free," that is, not suffering from the resolution limit. Furthermore, the question remains what other methods could be classified as resolution-limit-free. In this paper we suggest a rigorous definition and derive some basic properties of resolution-limit-free methods. More importantly, we are able to prove exactly which class of community detection methods are resolution-limit-free. Furthermore, we analyze which methods are not resolution-limit-free, suggesting there is only a limited scope for resolution-limit-free community detection methods. Finally, we provide such a natural formulation, and show it performs superbly.
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Hotspots and status of Fetal Alpha-Thalassemia from 2009 to 2023: a bibliometric analysis.
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PMID: 39726529 PMC: 11670076. DOI: 10.3389/fped.2024.1467760.
Bertagna M, Bright L, Ye F, Jiang Y, Sarkar D, Pradhan A bioRxiv. 2024; .
PMID: 39713406 PMC: 11661410. DOI: 10.1101/2024.12.12.627356.
ESCHR: a hyperparameter-randomized ensemble approach for robust clustering across diverse datasets.
Goggin S, Zunder E Genome Biol. 2024; 25(1):242.
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Wu Z, Kondo A, McGrady M, Baker E, Chidester B, Wu E Cell Rep Methods. 2024; 4(8):100838.
PMID: 39127044 PMC: 11384092. DOI: 10.1016/j.crmeth.2024.100838.